Sequence
atgc intronic sequence ATGC exonic sequence...atcaatttgtttttctcttcattcaatgctaatatttgtgatcttgtttcaatatgcaagaccatgatgtggcttattattgaggagcttcaacttgcagGTTGGCATGGCTGCTACTCTTGCAGGAGTGTGTCAAGTGCCTCTCACAGCAGTTTTGCTTCTCTTTGAACTGACCCAGGACTATAGGATAGTTCTACCAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g04260.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA14G00270.1 (Glycine max), 3'ss of exon 4
atcaatttgtttttctcttcattcaatgctaatatttgtgat--cttgtttcaatatgcaagaccatgatgtggcttattattgaggagcttcaacttgcagGTTGGCATGGCTGCTACTCTTGCAGGAGTGTGTCAAGTGCCTCTCACAGCAGTTTTGCTTCTCTTTGAACTGACCCAGGACTATAGGATAGTTCTACCAC
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aagaatttattcactgcct-acaaatgtctcatgttgataatgcataaatttgcgaactacgcttagtgcatagatgaccatattgaagttcct-tttgcagGTTGGAATGGCAGCGACTCTTGCAGGAGTTTGTCAAGTACCACTTACTGCAGTTTTGCTTCTGTTTGAATTGACACAGGACTATCGGATTGTTCTACCAC
upper sequence: Vv03s0038g04260.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT4G35440.1 (Arabidopsis thaliana), 3'ss of exon 3
---------------------------------------------------atcaatttgtt---tttctcttcattcaatgctaatatttgtgatcttgtttcaatatgcaag---accatgatgtggctt-attattgaggagctt-----------caacttgcagGTTGGCATGGCTGCTACTCTTGCAGGAGTGTGTCAAGTGCCTCTCACAGCAGTTTTGCTTCTCTTTGAACTGACCCAGGACTATAGGATAGTTCTACCAC
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gtactgttcttatgtggtcaatgtttcaaaattgtcttaatttcagactttcttgattggttacctatcaatactttgaacagaatattttttcgggttaactgagaatggatgctagtttttttgtagcttcattgccaatgatcctgtttgtctcattgtttaacagGTTGGAATGGCTGCTACACTTGCGGGGGTTTGTCAAGTTCCTCTTACAGCAGTACTACTGCTATTTGAACTTACACAGGATTATCGTATAGTGTTACCTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161716824|gb|FC064952.1|FC064952EST: TGTTTCATCTCTCCATTTTGGAAGTGGCGTCACCACAAGCATATGGCCTG GTTGGCATGGCTGCTACTCTTGCAGGAGTGTGTCAAGTGCCTCTCACAGCA
genomic: TGTTTCATCTCTCCATTTTGGAAGTGGCGTCACCACAAGCATATGGCCTGgtattgttct ... caacttgcagGTTGGCATGGCTGCTACTCTTGCAGGAGTGTGTCAAGTGCCTCTCACAGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttcaatatgcaagaccatgatgtggcttattattgaggagcttcaacttgcagGTTGGCATGGCTGCTACTCTTGCAGGAGTGTGTCAAGTGCCTCTCACAGCAGTTTTGCTTCTCTTTGAACTGACCCAGGACTATAGGATAGTTCTACCAC
ttattattga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atcaatttgtttttctcttcattcaatgctaatatttgtgatcttgtttcaatatgcaagaccatgatgtggcttattattgaggagcttcaacttgcagGTTGGCATGGCTGCTACTCTTGCAGGAGTGTGTCAAGTGCCTCTCACAGCAGTTTTGCTTCTCTTTGAACTGACCCAGGACTATAGGATAGTTCTACCAC
- - - - - - - ctcttca
- - - - - - - - - - - -caatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - tatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctta