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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACCTGTTGGGAGGGTCTACTTCACAGGCGAGCATACCAGCGAGTACTTCAACGGTTATGTTCATGGCGCATATCTTGCAGgtttgtcttatcatttatcatattaaactgccttccacagcagaagccagcagtcatacgtgctggaaattacaatagaaaaaattctttcgcag

Basic information

species Vitis vinifera
transcript Vv01s0127g00780.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0127g00780.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os03g09810.1 (Oryza sativa), 5'ss of exon 6
GCACCTGTTGGGAGGGTCTACTTCACAGGCGAGCATACCAGCGAGTACTTCAACGGTTATGTTCATGGCGCATATCTTGCAGgtttgtcttatcatttatcatattaaactgccttccacagcagaagccagcagtcatacgtgctggaaattacaatagaaaaaattctttcgcag
|| ||  ||| |||||| |||||||| || ||||| || |||||||||| ||| || ||||| ||||| |  |||||||||||| |  | |||| | |  | || | ||  ||||  ||              |    |  |||||  |   | |  |        ||||    |||
GCCCCGATTGAGAGGGTTTACTTCACCGGTGAGCACACAAGCGAGTACTACAATGGCTATGTCCATGGAGGTTATCTTGCAGgtata-catatc-tatgcc-tactcaagagcctgacaagatttctaatgctaaagttttgtgcttaattattcgctt-------ttctgcgtcag

upper sequence: Vv01s0127g00780.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G071343_T02 (Zea mays), 5'ss of exon 7
GCACCTGTTGGGAGGGTCTACTTCACAGGCGAGCATACCAGCGAGTACTTCAACGGTTATGTTCATGGCGCATATCTTGCAGgtttgtcttatcatttatcatattaaactgccttccacagcagaagccagcagtcatacgtgctggaaattacaatagaaaaaat-tctttcgcag
|| || |||||||||||||||||||| || ||||| |||||||||  || |||||| ||||| ||||| ||||| |||||||||      || |  || |   |    |||  | | ||   |     ||||          |||||   || ||| |||  || |  ||||   |||
GCGCCGGTTGGGAGGGTCTACTTCACTGGTGAGCACACCAGCGAGCGCTACAACGGCTATGTCCATGGAGCATACCTTGCAGgtcacctctagctcttgttggac-gtact--catgcatctcttgtaccagtgtggggttctgctgcccat-acactagctaatacatcttcaacag

upper sequence: Vv01s0127g00780.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G071217_T01 (Zea mays), 5'ss of exon 4
GCACCTGTTGGGAGGGTCTACTTCACAGGCGAGCATACCAGCGAGTACTTCAACGGTTATGTTCATGGCGCATATCTTGCAGgtttgtcttatcatttatcatattaaactgccttccacagcagaagccagcagtcatacgtgctggaaattacaatagaaaaaat-tctttcgcag
|| || |||||||||||||||||||| || ||||| |||||||||  || |||||| ||||| ||||| ||||| |||||||||      || |  || |   |   |     | | ||   |     ||||          |||||   || ||| |||  || |  ||||   |||
GCGCCGGTTGGGAGGGTCTACTTCACTGGTGAGCACACCAGCGAGCGCTACAACGGCTATGTCCATGGAGCATACCTTGCAGgtcacctctagctcttgttggacgtactactcatgcatctcttgtaccagtgtggggttctgctgcccat-acactagctaatacatcttcaacag

upper sequence: Vv01s0127g00780.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G034152_T02 (Zea mays), 5'ss of exon 6
------------------GCACCTGTTGGGAGGGTCTACTTCACAGGCGAGCATACCAGCGAGTACTTCAACGGTTATGTTCATGGCGCATATCTTGCAGgtttgtcttatcatttatcatattaaactgcctt-ccacagcagaagccagcagtcatacgtgctg---gaaattacaatagaaaaaattctttcgcag-------
                  ||||| ||||||||||| |||||||| |||||||| ||||||||| ||| ||| || ||||| ||||| || |||||| ||||| ||      || ||  | |    |||    || | |  | ||   |      |   || | | |   |||||| |           |   |  |  |       
GAATACGACCAGCTTAGGGCACCGGTTGGGAGGGTATACTTCACCGGCGAGCACACCAGCGAGCACTACAATGGCTATGTCCATGGAGCCTATCTTTCAGgtctgcaagtacacttgaccttcccaacaagattactagtgtagtgacataggcttgcacttacggcgtgaaatttcttccattcttgtgtctctgttgatggcag