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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcctatttttctccccaactcatcatcaaaattacttgataaataaatgggacagtcatgttaacttttgtcttttacaagcctagGCACCTGTTGGGAGGGTCTACTTCACAGGCGAGCATACCAGCGAGTACTTCAACGGTTATGTTCATGGCGCATATCTTGCAG

Basic information

species Vitis vinifera
transcript Vv01s0127g00780.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0127g00780.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G071217_T01 (Zea mays), 3'ss of exon 3
--gtaatcctatttttctccccaactcatcatcaaaat-----------tacttgataaataaatgggacagtcatgttaacttttgtcttttacaagcctagGCACCTGTTGGGAGGGTCTACTTCACAGGCGAGCATACCAGCGAGTACTTCAACGGTTATGTTCATGGCGCATATCTTGCAG
    | |||||   | |||    | | || ||| ||||           |||||  |   |      ||  |  || |||  | ||   | ||||||   ||||| || |||||||||||||||||||| || ||||| |||||||||  || |||||| ||||| ||||| ||||| |||||||
cttaagtcctaagatgctcttacagtaattatccaaatgttcttccttctacttcttcttttttgctgatgg--attttatatgttaattattacaaat-tagGCGCCGGTTGGGAGGGTCTACTTCACTGGTGAGCACACCAGCGAGCGCTACAACGGCTATGTCCATGGAGCATACCTTGCAG

upper sequence: Vv01s0127g00780.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G071343_T02 (Zea mays), 3'ss of exon 6
-------------------------------------------------------------gtaatcctatttttctcccca-actcatcatcaaaat-----tacttgataaataaatgggacagtc-atgttaacttttgtcttttacaagcctagGCACCTGTTGGGAGGGTCTACTTCACAGGCGAGCATACCAGCGAGTACTTCAACGGTTATGTTCATGGCGCATATCTTGCAG
                                                             || |     |  |  |    | | | || ||| ||||     | |||  |       |  |    |  || |||  | ||   | ||||||    |||| || |||||||||||||||||||| || ||||| |||||||||  || |||||| ||||| ||||| ||||| |||||||
gttcgtatgcctgtgtgatcaaactgacgcgcagttgcctgcagctgcaggccggccggcggttactaattaatagtagttacagtaattatccaaatgttcttccttcttcttcttttttgctgatggattttatatgttaattattacaa--taagGCGCCGGTTGGGAGGGTCTACTTCACTGGTGAGCACACCAGCGAGCGCTACAACGGCTATGTCCATGGAGCATACCTTGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacttgataaataaatgggacagtcatgttaacttttgtcttttacaagcctagGCACCTGTTGGGAGGGTCTACTTCACAGGCGAGCATACCAGCGAGTACTTCAACGGTTATGTTCATGGCGCATATCTTGCAG
                           tgttaac  putative branch site (score: 2)
                                 cttttgtcttttac  CT-rich tract
     tgataaataaat  TA-rich tract