Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gattttctctaaattcattcccttcctttaaatgcactgattcttggcgtttttggtggggttcattacgtttaatctgtcttttgtgttaaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGAGACAAATGTATCCACAAGGGAGGCCCTG

Basic information

species Vitis vinifera
transcript Vv01s0010g03900.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30305639|gb|CB982433.1|CB982433
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110399072|gb|EC965559.1|EC965559
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|71873908|gb|DT022963.1|DT022963
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|22015478|gb|BQ800512.1|BQ800512
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110712089|gb|EE089314.1|EE089314
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|71880682|gb|DT029737.1|DT029737
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|71868487|gb|DT017542.1|DT017542
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|71889876|gb|DT038931.1|DT038931
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|27583417|gb|CB006112.1|CB006112
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110403805|gb|EC969577.1|EC969577
EST:     AGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCTTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: AGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|30131761|gb|CB917100.1|CB917100
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110723421|gb|EE100715.1|EE100715
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|77580059|gb|DV218917.1|DV218917
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110359151|gb|EC920177.1|EC920177
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|71881895|gb|DT030950.1|DT030950
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|30136740|gb|CB922078.1|CB922078
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|71889053|gb|DT038108.1|DT038108
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|27585959|gb|CB008654.1|CB008654
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110712423|gb|EE090024.1|EE090024
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|71889042|gb|DT038097.1|DT038097
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|33403302|gb|CF208929.1|CF208929
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110704734|gb|EE081744.1|EE081744
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|27585043|gb|CB007738.1|CB007738
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|30303485|gb|CB980279.1|CB980279
EST:     TCATTTTCTCCAATAGAGGAAANCTNTACGAGTTTTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: TCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110388584|gb|EC953349.1|EC953349
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110719743|gb|EE095140.1|EE095140
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110694549|gb|EE071752.1|EE071752
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|22007094|gb|BQ792128.1|BQ792128
EST:     GAGG-AAACTCTAGGAGTTCTGCAGTAGCTCGAG                         TATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: GAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110687669|gb|EE065341.1|EE065341
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|22007696|gb|BQ792730.1|BQ792730
EST:     ATCATCTT-TCCAATAGAGG-AAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|27584817|gb|CB007512.1|CB007512
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|77582677|gb|DV220326.1|DV220326
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110380407|gb|EC945670.1|EC945670
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110718560|gb|EE095529.1|EE095529
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110425607|gb|EC991996.1|EC991996
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|71865927|gb|DT014982.1|DT014982
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|71867280|gb|DT016335.1|DT016335
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|71875707|gb|DT024762.1|DT024762
EST:     TCATCTTCTCCAATAGAGGAAAACTCTGACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: TCATCTTCTCCAATAGAGGAAAACTCT-ACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110713700|gb|EE089849.1|EE089849
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110715716|gb|EE094085.1|EE094085
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|71865752|gb|DT014807.1|DT014807
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110730953|gb|EE108621.1|EE108621
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|71865126|gb|DT014181.1|DT014181
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110376019|gb|EC941058.1|EC941058
EST:     GGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: GGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|77585438|gb|DV221807.1|DV221807
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|27585475|gb|CB008170.1|CB008170
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110721102|gb|EE097716.1|EE097716
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCATAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|71868156|gb|DT017211.1|DT017211
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110697731|gb|EE074976.1|EE074976
EST:     CGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: CGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110712595|gb|EE090396.1|EE090396
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110429920|gb|EC996434.1|EC996434
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|30136573|gb|CB921911.1|CB921911
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|33402486|gb|CF208113.1|CF208113
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110719853|gb|EE095340.1|EE095340
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110404999|gb|EC970527.1|EC970527
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|71879172|gb|DT028227.1|DT028227
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|30303546|gb|CB980340.1|CB980340
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110714743|gb|EE092000.1|EE092000
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110723744|gb|EE101406.1|EE101406
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110408461|gb|EC974097.1|EC974097
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110728910|gb|EE104892.1|EE104892
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|71867358|gb|DT016413.1|DT016413
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|71871586|gb|DT020641.1|DT020641
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|77586803|gb|DV222545.1|DV222545
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110414093|gb|EC979917.1|EC979917
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|22015537|gb|BQ800571.1|BQ800571
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110727365|gb|EE104044.1|EE104044
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110711620|gb|EE088309.1|EE088309
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110724056|gb|EE099551.1|EE099551
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|71877236|gb|DT026291.1|DT026291
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|71877899|gb|DT026954.1|DT026954
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|22012123|gb|BQ797157.1|BQ797157
EST:     ATCAT-TTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|71885249|gb|DT034304.1|DT034304
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|77579970|gb|DV218863.1|DV218863
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|27584939|gb|CB007634.1|CB007634
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110383592|gb|EC947973.1|EC947973
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110722860|gb|EE099514.1|EE099514
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|77584215|gb|DV221169.1|DV221169
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110366970|gb|EC930890.1|EC930890
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTGTGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110723441|gb|EE100759.1|EE100759
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|30252207|gb|CB969758.1|CB969758
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|110399754|gb|EC966279.1|EC966279
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
EST: gi|77583144|gb|DV220607.1|DV220607
EST:     ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAG                         CATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA
genomic: ATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGgtaataacac ... aaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcgtttttggtggggttcattacgtttaatctgtcttttgtgttaaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGAGACAAATGTATCCACAAGGGAGGCCCTG
                        gtttaat  putative branch site (score: 4)
                         tttaatct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gattttctctaaattcattcccttcctttaaatgcactgattcttggcgtttttggtggggttcattacgtttaatctgtcttttgtgttaaatgtctagCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGAGACAAATGTATCCACAAGGGAGGCCCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - -cccttcc
- - - - - - - - - - - - - - - aatgcac
- - - - - - - - - - - - - - - - - - - - ttcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgggg