Sequence
atgc intronic sequence ATGC exonic sequenceGAAGAATTTCAACTGGCGTTATTTAAGACAAACAAAAAGGAGAGTTTGTTTGCAGACCGGgtacactctttttcacatgtgaaaacttcaagttggtcggtttcattgagggtttgccaccgcacccttttttcccaattcatagtctttatttttccca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s1569g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G55990.1 (Arabidopsis thaliana), 5'ss of exon 5
GAAGAATTTCAACTGGCGTTATTTAAGACAAACAAAAAGGAGAGTTTGTTTGCAGACCGGgta-cactctttttcacatgtgaaaacttcaagttggtcggtttcattgagggtttgccaccgcacccttttttcccaattcatagtctttatttttccca
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GAAGAGTTTCAGTTGGCTTTGTTTAAGACAAATAAAAAAGAGAGTTTGTTTGCAGATCGGgtaatgtttctttcttcacattataagtgttcttaaacccatttttgtcaagatcaagtttagaagaaatgctga--aatatgtgat-tttgtttctag--
upper sequence: Vv00s1569g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 5
GAAGAATTTCAACTGGCGTTATTTAAGACAAACAAAAAGGAGAGTTTGTTTGCAGACCGGgtacactctttttcacatgtgaaaacttcaagttggtcggtttcattgagggtttgccaccgcacccttttttcccaattcatagtctttatttttccca
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GAAGAATTTCAGTTAGCCTTGTTCAAGACAAATAAAAAAGAGAGCTTGTTTGCAGACCGGgtatgttcttcttttttaatcaaaa-------------gactttgttatccatttgcca--agatcctttttgaaagataacttgacag-----------
upper sequence: Vv00s1569g00020.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G26570.1 (Arabidopsis thaliana), 5'ss of exon 5
GAAGAATTTCAACTGGCGTTATTTAAGACAAACAAAAAGGAGAGTTTGTTTGCAGACCGGgtacactctttttcacatgtgaaaacttcaagttggtcggtttcattgagggtttgccaccgcacccttttttcccaattcatagtctttatttttccca-
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GAAGAATTTCAGTTAGCCTTGTTCAAGACAAATAAAAAAGAGAGCTTGTTTGCAGACCGGgtatgttcttcttttttaatcaaaa-------------gactttgttatccatttgcca--agatcctttttgaaagataacttgacagtaccaatcacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|77582686|gb|DV220332.1|DV220332EST: AACTGGCGTTATTTAAGACAAACAAAAAGGAGAGTTTGTTTGCAGACCGG GTATTTGACTTGTTTGACACAAAGCACAATGGAATACTAGATTTTGAAGAG
genomic: AACTGGCGTTATTTAAGACAAACAAAAAGGAGAGTTTGTTTGCAGACCGGgtacactctt ... aatcttgtagGTATTTGACTTGTTTGACACAAAGCACAATGGAATACTAGATTTTGAAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGAATTTCAACTGGCGTTATTTAAGACAAACAAAAAGGAGAGTTTGTTTGCAGACCGGgtacactctttttcacatgtgaaaacttcaagttggtcggtttcattgagggtttgccaccgcacccttttttcccaattcatagtctttatttttccca
- - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgaaaa