Sequence
atgc intronic sequence ATGC exonic sequenceAGTGTAAGTGAAATAGAAGCACTTTATGAACTGTTTAAGAAGATCAGCAGTGCTGTAATTGATGATGGCCTCATCAACAAGgtgacatactgttttcctacttatactgaaagtctgtaggctatcatattgttttgcagtttcaggatgacattgctcctctgttatatcttagcacaaatttagcaatcttcttgtgaaaattccattattaatttgaagtactgatactttcttactattgtgttttgttggtggattctttaaatcccatattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s1569g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G112672_T02 (Zea mays), 5'ss of exon 2
--AGTGTAAGTGAAATAGAAGCACTTTATGAACTGTTTAAGAAGATCAGCAGTGCTGTAATTGATGATGGCCTCATCAACAAGgtgacatactgttttcctacttatactgaaagtctgtaggctatcatattgttttgcagtttcaggatgacattgctcctctgttatatcttagcacaaatttagcaatcttcttgtgaaaattccattattaatttgaagtactgatactttcttactattgtgttttgttggtggattctttaaatcccatattgcag
|| || || || | || ||| | ||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||| || || ||| ||| || || | | | | || | || ||| || | |||| | | ||||| | | | || | |||| || | | | |||| | | | || |
TTAGCGTGAGCGAGGTCGAGGCATTGTATGAACTGTTCAAGAAGATCAGCAGTGCTGTGATTGATGATGGGCTGATCAACAAGgtttgtgggtgatt----------gctg-----ctgctttctttcttttcttctcttaggaaaatgaatacaactttcttgctttatgtatgtacacaatacacatacaccatacacatgatcgtgatgagtaatctgggttgtgg---cgctcttgtcctggcatcctgcag---------------------------
upper sequence: Vv00s1569g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G173424_T01 (Zea mays), 5'ss of exon 3
--AGTGTAAGTGAAATAGAAGCACTTTATGAACTGTTTAAGAAGATCAGCAGTGCTGTAATTGATGATGGCCTCATCAACAAGgtgacatactgttttcctactta-tactgaaagtctgtaggctatcatattg--ttttgcagtttcaggatgacattgctcctctgtta-tatcttagcacaaatttagcaatcttcttgtgaaaattcca--ttattaatttgaagtactgatactttcttactattgtgttttgttggtggattctttaaatcccatattgcag
|| || ||||| | || || || || || |||||||||| ||||||||| || || ||||||||||| || || |||||||| | | | || | | |||| | | | || |||| |||| || | | | | |||||| ||| | | | |||| | || ||| || | | | | |
TCAGCGTGAGTGAGGTCGAGGCGCTGTACGAGCTGTTTAAGAGGATCAGCAGCGCCGTCATTGATGATGGGCTGATTAACAAGgtcggcaatgggtgtctggttcactacttggttcttatgtaatctcttattaatctttgtggtatgtgcaagtgtggatggtcctgttagtatgcttgtgtgtgatggtcaatgctgagatggctgttcttgcttgtcacctctgcgcag--------------------------------------------------------
upper sequence: Vv00s1569g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G007555_T01 (Zea mays), 5'ss of exon 3
--AGTGTAAGTGAAATAGAAGCACTTTATGAACTGTTTAAGAAGATCAGCAGTGCTGTAATTGATGATGGCCTCATCAACAAGgtgacatactgttttcctactta-tactgaaagtctgtaggctatcatattgttttgcagtttcaggatgacattgctcctctgttatatcttagcacaaatttagcaatctt-cttgtgaaaattccattattaatttgaagtactgatactttcttactattgtgttttgttggtggattctttaaatcccatattgcag
|| || || || | || || || || || ||||| |||||||| ||||||||||| || |||||||| || || |||||||| | | | | | | | | | | | || ||||||| || | | | || || | | | | | ||| |||| ||||| | |
TCAGCGTGAGCGAGGTCGAGGCTCTGTACGAGCTGTTCAAGAAGATAAGCAGTGCTGTCATCGATGATGGGCTGATTAACAAGgtcagtgatgggtgattggtccactgtttagttcttatgtaatctcttattgttgtgtatggtatgtgcatttgtgggtgatggtcaatgcctgagatatattagctgttcttgcttgtcacctctttgcag----------------------------------------------------------------------
upper sequence: Vv00s1569g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA07G39940.1 (Glycine max), 5'ss of exon 3
--AGTGTAAGTGAAATAGAAGCACTTTATGAACTGTTTAAGAAGATCAGCAGTGCTGTAATTGATGATGGCCTCATCAACAAGgtgacatactgttttcctacttatactgaaagtctgtaggctatcatattgttttgcagtttcaggatgacattgctcctctgttatatcttagcacaaatttagcaatcttcttgtgaaaattccattattaatttgaagtactgatactttcttactattgtgttttgttggtggattctttaaatcccatattgcag
||||||||||| || |||||||| |||||| |||| ||||||||||||||||| || |||||||| || || || || ||||| || | | || | || ||| ||| | ||| |||| || | ||| ||| ||| | | | | || | | |||| | | ||||| |
TTAGTGTAAGTGAGATTGAAGCACTGTATGAATTGTTCAAGAAGATCAGCAGTGCAGTGATTGATGACGGACTAATTAATAAGgtttttta-tatcatctt--ttgctctgtccttctatcagcttg-----tgttatgaacttt-----tgatatttgtatttt-caacatttctggacaa---tgcctttcttcctag-----------------------------------------------------------------------------------
upper sequence: Vv00s1569g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G00830.1 (Glycine max), 5'ss of exon 3
--AGTGTAAGTGAAATAGAAGCACTTTATGAACTGTTTAAGAAGATCAGCAGTGCTGTAATTGATGATGGCCTCATCAACAAGgtgacatactgttttcctacttatactgaaagtctgtaggctatcatattgttttgcagtttcaggatgacattgctcctctgttatatcttagcacaaatttagcaatcttcttgtgaaaattccattattaatttgaagtactgatactttcttactattgtgttttgttggtggattctttaaatcccatattgcag
||||||||||| || ||||| || |||||| |||| ||||||||||||||||| || |||||||| || || || || ||||| | | | || | || ||| || | |||||| |||| || | ||| ||| | || ||| | | | || | ||| |
TTAGTGTAAGTGAGATTGAAGCGCTATATGAATTGTTCAAGAAGATCAGCAGTGCAGTGATTGATGACGGACTAATTAATAAGgtttttttatatcatctt--ttgctctg----tcctt---ctatcagtttgtgttatgaacttgtgatat--ttgtattttcaacatttctggac-----tgtgacatttttccta------------------------------------------------------------------------------------
upper sequence: Vv00s1569g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G55990.1 (Arabidopsis thaliana), 5'ss of exon 4
--AGTGTAAGTGAAATAGAAGCACTTTATGAACTGTTTAAGAAGATCAGCAGTGCTGTAATTGATGATGGCCTCATCAACAAGgtgacatactgttttccta---cttatactgaaagtctgtaggctatcat-attgttttgcagtttcaggatgacattgctcctctgttatatcttagcacaaatttagcaatcttcttgtgaaaattccattattaatttgaagtactgatactttcttactattgtgttttgttggtggattctttaaatcccatattgcag
||||| |||||||||||||| |||||||| || |||||||| ||||||||||| || ||||||||||| || || |||||||| | || || | ||| | | | | | ||| | | |||| | | | || | | | || ||| ||| || | | || ||
TTAGTGTGAGTGAAATAGAAGCTCTTTATGAGCTTTTTAAGAAAATCAGCAGTGCCGTGATTGATGATGGGCTAATAAACAAGgtataactctaacttgtttgatcttcttcctcatttggtaaagctttagtgattgatcta-acaatctgtctaat-ttactcatctcttgt-ttgtatcag-------------------------------------------------------------------------------------------------------
upper sequence: Vv00s1569g00020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 4
--AGTGTAAGTGAAATAGAAGCACTTTATGAACTGTTTAAGAAGATCAGCAGTGCTGTAATTGATGATGGCCTCATCAACAAGgtg---acatactgttttcctacttatactgaaagtctgtaggctatcatattgttttgcagtttcaggatgacattgctcctctgttatatcttagcacaaatttagcaatcttcttgtgaaaattccattattaatttgaagtactgatactttcttactattgtgttttgttggtggattctttaaatcccatattgcag
|| || ||||||||||| || || ||||| ||||||||||| |||||||||||||| ||||||||||| || || |||||||| | | | | || | | | | | | | | | ||| | | | | | || | | || | | ||| | | ||| | | | || |||
TTAGCGTGAGTGAAATAGAGGCTCTCTATGAGCTGTTTAAGAAAATCAGCAGTGCTGTGATTGATGATGGGCTAATAAACAAGgtatgaaggaagggcatcattatatgtcttttatgccact---cacttatact-cctcacgaatcatgcatattgctacgtcttttggacatccttttctgattttccttgacctgtcttgtcg-ttcag-------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|77582686|gb|DV220332.1|DV220332EST: TGTTTAAGAAGATCAGCAGTGCTGTAATTGATGATGGCCTCATCAACAAG GAAGAATTTCAACTGGCGTTATTTAAGACAAACAAAAAGGAGAGTTTGTTT
genomic: TGTTTAAGAAGATCAGCAGTGCTGTAATTGATGATGGCCTCATCAACAAGgtgacatact ... catattgcagGAAGAATTTCAACTGGCGTTATTTAAGACAAACAAAAAGGAGAGTTTGTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTGTAAGTGAAATAGAAGCACTTTATGAACTGTTTAAGAAGATCAGCAGTGCTGTAATTGATGATGGCCTCATCAACAAGgtgacatactgttttcctacttatactgaaagtctgtaggctatcatattgttttgcagtttcaggatgacattgctcctctgttatatcttagcacaaatttagcaatcttcttgtgaaaattccattattaatttgaagtactgatactttcttactattgtgttttgttggtggattctttaaatcccatattgcag
- - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - AGATCA