Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTTGATGCACAACCTGAGCTTTTCATCCATATAGTCCCAGACAAGACCAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtgatttgaagtaattttcattttgtaatgtgatgcttgcctttgaatggccttttgtttgttgacaaaatctatttctgatgtgttctgcag

Basic information

species Vitis vinifera
transcript Vv00s0194g00030.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26261841|gb|CA812904.1|CA812904
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|71875363|gb|DT024418.1|DT024418
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGTACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|32459908|gb|CD801082.1|CD801082
EST:     CATTGACAGTGGAATTGGGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGTACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CATTGACAGTGGAATT--GGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|161712228|gb|FC061602.1|FC061602
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|30303936|gb|CB980730.1|CB980730
EST:     CAACAACAGTCTCACTATCCTTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGGACAACCTTGGTACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|29782915|gb|CB348632.2|CB348632
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|77582403|gb|DV220172.1|DV220172
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGTACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|33408555|gb|CF214182.1|CF214182
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGTACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|33406761|gb|CF212388.1|CF212388
EST:     GTCTC-CTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGTACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: GTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|26261036|gb|CA812099.1|CA812099
EST:     CAACAACAGTC-CACTATCATTGACAGTGGAATTGGAATGA-CAAGGCTG                         ACCTGGTGAACAACCTTGGTACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|71869687|gb|DT018742.1|DT018742
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGTACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|110709719|gb|EE085424.1|EE085424
EST:     CAACAATAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAATCTTGGTACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|71865324|gb|DT014379.1|DT014379
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGTACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|26262862|gb|CA813925.1|CA813925
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|30301308|gb|CB978102.1|CB978102
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|28969677|gb|CB348710.1|CB348710
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|71867090|gb|DT016145.1|DT016145
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGTACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|110381165|gb|EC946485.1|EC946485
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|32456550|gb|CD797724.1|CD797724
EST:     CAACAGTCTCACTATCATTGACAGTGGAATTTTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGTACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAGTCTCACTATCATTGACAGTGGAA--TTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|29783515|gb|CB349721.2|CB349721
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCACGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|26262787|gb|CA813850.1|CA813850
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAGTGACCAAGGCTG                         ACCTGGTGAACAACCTTGGTACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|26261611|gb|CA812674.1|CA812674
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAGTGANCAAGGCTG                         ACCTGGTGAACAACCTTGGTACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|161715036|gb|FC063956.1|FC063956
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|71867882|gb|DT016937.1|DT016937
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGTACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|26260282|gb|CA811345.1|CA811345
EST:     CAACAACAGTC-CACTATCATTGACAGTGGAATTGGAATGA-CAAGGCTG                         ACCTGGTGAACAACCTTGGTACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|71877217|gb|DT026272.1|DT026272
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|26263202|gb|CA814265.1|CA814265
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|71867401|gb|DT016456.1|DT016456
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGTACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|33406676|gb|CF212303.1|CF212303
EST:     GTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGTACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: GTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|71869093|gb|DT018148.1|DT018148
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|34319477|gb|CF372231.1|CF372231
EST:     CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAACCTTGGTACCATTGCAAGGTCTGGAANCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA
EST: gi|110731072|gb|EE108876.1|EE108876
EST:     CAACAATAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTG                         ACCTGGTGAACAATCTTGGTACCATTGCAAGGTCTGGAACCAAGGAGTTCA
genomic: CAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtg ... tgttctgcagACCTGGTGAACAACCTTGGGACCATTGCAAGGTCTGGAACCAAGGAGTTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGCTTGATGCACAACCTGAGCTTTTCATCCATATAGTCCCAGACAAGACCAACAACAGTCTCACTATCATTGACAGTGGAATTGGAATGACCAAGGCTGgtgagtagtgatttgaagtaattttcattttgtaatgtgatgcttgcctttgaatggccttttgtttgttgacaaaatctatttctgatgtgttctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA