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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCAGGCGGAGATCAACCAGCTGCTCAGTCTCATCATCAACACTTTCTATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttcagaacagtttctccttcacttctccttttaaggatctgatcgactgcgtgtgttgcgcgtatttcatgttcgtaatgatgcaatgcgatt...

Basic information

species Vitis vinifera
transcript Vv00s0194g00030.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0194g00030.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G44590.1 (Glycine max), 5'ss of exon 1
ATTCCAGGCGGAGATCAACCAGCTGCTCAGTCTCATCATCAACACTTTCTATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttcagaacagtttctccttcacttctccttttaaggatctgatcgactgcgtgtgttgcgcgtatttcatgttcgtaatgatgcaatgcgatt----
 |||||||| |||||||||||||| |||||||||||||||||||| |||||   ||||||||||||||||||||||||  ||||||||||  ||||||||||  ||||         |  |||||| |||| |  |||        || |       |||| ||  |    |     | |  || | |   ||   | ||    
TTTCCAGGCTGAGATCAACCAGCTCCTCAGTCTCATCATCAACACCTTCTACTCCAACAAGGAGATTTTCCTTCGTGAACTCATCAGCAACGCCTCCGATgtacgtttcttcgtttttcgctccttgacttgttgtttctg---cttgtttcgtgatgtgt-ttatgttcttcatccgattttattcaactaacatgctttatt

upper sequence: Vv00s0194g00030.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA18G08220.1 (Glycine max), 5'ss of exon 1
-ATTCCAGGCGGAGATCAACCAGCTGCTCAGTCTCATCATCAACACTTTCTATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttcagaacagtttctccttcacttctccttttaaggatctgatcgactgcgtgtgttgcgcgtatttcatgttcgtaatgatgcaatgcgatt--
  |||||||| |||||||||||||| |||||||||||||||||||| |||||   ||||||||| || |||||||||||  ||||||||||  |||| ||||| |||||         | |||| ||  ||||   |||      | |||     ||| | || |       |  | | || ||  |  |   || | |||  
CTTTCCAGGCTGAGATCAACCAGCTCCTCAGTCTCATCATCAACACCTTCTACTCCAACAAGGAAATCTTCCTTCGTGAACTCATCAGCAACGCCTCTGAtgtaagtttcttcgttcttctctcttttccttcctttttctctcgt-tgacttgttgcttctgcttgattcgtgacgtatttgtgtt--tttcatccaattta

upper sequence: Vv00s0194g00030.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S220_83V6.1 (Physcomitrella patens), 5'ss of exon 1
ATTCCAGGCGGAGATCAACCAGCTGCTCAGTCTCATCATCAACACTTTCTATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttcagaacagtttctccttcacttctccttttaaggatctgatcgactgcgtgtgttgcgcgtatttcatgttcgtaatgatgcaatgcgatt-
 ||||||||||||||||| ||| || | ||| | || |||||||||||||| || ||||||||||| ||| |  | ||  |||||||||| || || |||||  || ||       |   ||  ||   |     || |  |  || |||   ||       | |    |||   |||    ||  |||||      | | 
TTTCCAGGCGGAGATCAATCAGTTGTTGAGTTTGATTATCAACACTTTCTACAGTAACAAGGAGATATTCTTGAGAGAACTCATCAGCAACTCTTCTGATgtaggtgtttttgcttggaactt-tttgttgtaggttctgtgcctcagatatgctttagagttggtttctatgcgatgacattagcgatgcccgctaacta

upper sequence: Vv00s0194g00030.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S220_79V6.1 (Physcomitrella patens), 5'ss of exon 1
ATTCCAGGCGGAGATCAACCAGCTGCTCAGTCTCATCATCAACACTTTCTATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttcagaacagtttctccttcacttctccttttaaggatct--gatcga-ctgcgtgtgttgcgc-gtatttcatgttcgtaatgatgcaatgcgatt
 ||||||||||||||||||||| |||| ||| | || |||||||||||||| ||||||||||| |||||| |  | ||| | ||||| || || |||||||| | |||    ||   |||     |   |     ||| ||  ||      | || ||    | || ||   |   || | ||  |  |  || | |  |    
CTTCCAGGCGGAGATCAACCAGTTGCTTAGTTTGATTATCAACACTTTCTACAGCAACAAGGAAATTTTCTTAAGAGAGTTGATCAGTAACTCATCCGATgtaattttctttaaacttttgcaagttcttgaatatttgaatcattctcagttgatctatcagggtcgcattgcgctttaagtctg--agaattccagacat--

upper sequence: Vv00s0194g00030.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S258_52V6.1 (Physcomitrella patens), 5'ss of exon 1
ATTCCAGGCGGAGATCAACCAGCTGCTCAGTCTCATCATCAACACTTTCTATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagtttt----cagaacagtttctccttcacttctccttttaaggatctgatcgac----tgcgtgtgttgcgcgtatttcatgttcgtaatgatgcaatgcgatt
 || |||||||| ||||| ||| |||| ||| | ||||||||||| ||||| |||||||||||||||||||| || ||  | ||||||||||| || ||||| |||  |    | ||  |   || | | |  |  || | |   |  | |  | | |    |   |||||   | | |   |   |      || ||||        
CTTTCAGGCGGAAATCAATCAGTTGCTGAGTTTGATCATCAACACCTTCTACAGCAACAAGGAGATTTTCCTGCGAGAACTTATCAGCAATTCTTCTGATgtaagtgctagtgctgacgaaagtcccatgcggtcttcttgtcgggattgtagtggccagtctatctgtgtcatgtgcacgccgattcttggttggtgca--------

upper sequence: Vv00s0194g00030.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S291_62V6.1 (Physcomitrella patens), 5'ss of exon 1
ATTCCAGGCGGAGATCAACCAGCTGCTCAGTCTCATCATCAACACTTTCTATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttcagaacagtttctccttcacttctccttt-taaggatctgatcgactgcgtgtgttgcgcgtatttcatgttcgtaatgatgcaatgcgatt---------
 ||||||||||||||||| ||  || | ||| | ||||| ||||| |||||||||||||||||||||||| | || ||  ||||||| |||||||| ||||| ||| ||        |||| || |  ||| |    | |  |  ||| ||||  ||  | | ||   | | |    ||    |   || ||   ||| ||         
TTTCCAGGCGGAGATCAATCAATTGTTGAGTTTGATCATTAACACCTTCTATAGCAACAAGGAGATTTTCTTGCGAGAACTCATCAGTAATTCCTCGGATgtaagtgttt-------tttcacccttgcttgtgtactgtttgtgtctcatcg--tgtctctatttgtcatttgcggtggagttggcgaggccg-gcgtttcccgtagag

upper sequence: Vv00s0194g00030.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ25533 (Selaginella moellendorffii), 5'ss of exon 1
ATTCCAGGCGGAGATCAACCAGCTGCTCAGTCTCATCATCAACACTTTCTATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttcagaacagtttc-----tccttcacttctccttttaaggatctgatcgactgcgtg-tgttgcgcgtatttcatgttcgtaatgatgcaatgcgatt-----
 ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||| | || ||| ||||||||||| |||| ||||||||| ||     |   |||     |  || ||| ||  | | |  |||||  | | || | |  ||       |     || || | | |  | |  |||||||     
CTTCCAGGCGGAGATCAACCAGCTTCTCAGTCTCATCATCAACACCTTCTACAGCAACAAGGAGATCTTCTTGCGGGAGCTCATCAGCAATGCCTCGGATgtgagtgttagatgctcgttcggcgatattttactgctattctcatcgatct--ttgccttctttctgcgatttctcaccgatctttgcattctttc--tgcgatttccag

upper sequence: Vv00s0194g00030.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ29061 (Selaginella moellendorffii), 5'ss of exon 1
ATTCCAGGCGGAGATCAACCAGCTGCTCAGTCTCATCATCAACACTTTCTATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttcagaacagtttctccttcacttctccttttaaggatctgatcgactgcgtgtgttgcgcgtatttcatgttcgtaatgatgcaatgcgatt
 |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | || ||| ||||||||||| |||| ||||||||| ||  |     ||  || | || ||||  |       |     ||  || |   || |||||   | | |     |                  
GTTCCAGGCTGAGATCAACCAGCTTCTCAGTCTCATCATCAACACTTTCTACAGCAACAAGGAGATTTTCTTGCGGGAGCTCATCAGCAATGCCTCGGATgtgagtatttcgcctccttgttcttccagttcttgtc----aaactctttcttcttctcatgctgcgccgctgtgactccag------------------

upper sequence: Vv00s0194g00030.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ22362 (Selaginella moellendorffii), 5'ss of exon 1
ATTCCAGGCGGAGATCAACCAGCTGCTCAGTCTCATCATCAACACTTTCTATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttcagaacagtttctccttcacttctccttttaaggatctgatcgac---tgcgtgtgttgcgcg-tatttcat-gttcgtaatgatgcaa-tgcgatt-----
 ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||| | || ||| ||||||||||| |||| ||||||||| ||     |   |||  |   | ||| |    |  |  ||| |||||    ||| |   ||  ||| | | |||  | || |   | |     |||||||     
CTTCCAGGCGGAGATCAACCAGCTTCTCAGTCTCATCATCAACACCTTCTACAGCAACAAGGAGATCTTCTTGCGGGAGCTCATCAGCAATGCCTCGGATgtgagtgttagatgctcgttcggcgatatttcac----tgcgattctcatcgatctttgccttctttctgcgatttctcaccgatctttgcgttctttctgcgatttccag

upper sequence: Vv00s0194g00030.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: EFJ17594 (Selaginella moellendorffii), 5'ss of exon 1
ATTCCAGGCGGAGATCAACCAGCTGCTCAGTCTCATCATCAACACTTTCTATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttcagaacagtttctccttcacttctccttttaaggatctgatcgactgcgtgtgttgcgcgtatttcatgttcgtaatgatgcaatgcgatt
 |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | || ||| ||||||||||| |||| ||||||||| ||  |    |||  |||    ||| ||         |     ||  || |   || |||||   | | |     |                  
GTTCCAGGCTGAGATCAACCAGCTTCTCAGTCTCATCATCAACACTTTCTACAGCAACAAGGAGATTTTCTTGCGGGAGCTCATCAGCAATGCCTCGGATgtgagtatttcgcctcgttcttccagttcttgtc-------aaactctttcttcttctcatgctgcgctgctgtgactccag------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26261841|gb|CA812904.1|CA812904
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|71875363|gb|DT024418.1|DT024418
EST:     GCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: GCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|161712228|gb|FC061602.1|FC061602
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|30303936|gb|CB980730.1|CB980730
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|29782915|gb|CB348632.2|CB348632
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|77582403|gb|DV220172.1|DV220172
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|33408555|gb|CF214182.1|CF214182
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|26261036|gb|CA812099.1|CA812099
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|71869687|gb|DT018742.1|DT018742
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|110709719|gb|EE085424.1|EE085424
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|71865324|gb|DT014379.1|DT014379
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|26262862|gb|CA813925.1|CA813925
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|30301308|gb|CB978102.1|CB978102
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|28969677|gb|CB348710.1|CB348710
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|71867090|gb|DT016145.1|DT016145
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|110381165|gb|EC946485.1|EC946485
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|29783515|gb|CB349721.2|CB349721
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATGAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|26262787|gb|CA813850.1|CA813850
EST:     GATCAGCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: GATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|26261611|gb|CA812674.1|CA812674
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCAGCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|161715036|gb|FC063956.1|FC063956
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|71867882|gb|DT016937.1|DT016937
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|26260282|gb|CA811345.1|CA811345
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|71877217|gb|DT026272.1|DT026272
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|71867401|gb|DT016456.1|DT016456
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|71869093|gb|DT018148.1|DT018148
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
EST: gi|110731072|gb|EE108876.1|EE108876
EST:     ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGAT                         GCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT
genomic: ATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttc ... ctggatatagGCTCTGGACAAGATAAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTCCAGGCGGAGATCAACCAGCTGCTCAGTCTCATCATCAACACTTTCTATAGCAACAAGGAGATTTTCCTTCGTGAGATCATCAGCAATTCCTCCGATgtgagttttcagaacagtttctccttcacttctccttttaaggatctgatcgactgcgtgtgttgcgcgtatttcatgttcgtaatgatgcaatgcgatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctcc