1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagtgttgagagtaagttccttggttttttagctcttccatagttcttcaagtttcgttcgatcggtttctctccttccttttcgtcgctctcgcacagcttccaagttctagttcttcaagtatctagcaaagcgtctttgtgtccttctggcaaaactaaagttttggaaatcttgtcagGCACCCTTGGCCGGACATTGACAACACTTGGAGCGCAATCTTCCACATTGCAAAGGCGAGCAGTGGGCCGCCAATCCCCGAGCACGGCTCGGGCTGTGTC
species | Selaginella moellendorffii |
transcript | EFJ38649 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTGATATATGGAGCGTCGGCTGCACAGTCATTGAAATGCTCACAGCCAT GCACCCTTGGCCGGACATTGACAACACTTGGAGCGCAATCTTCCACATTGCEST: gi|169036895|gb|FE444986.1|FE444986
genomic: GCTGATATATGGAGCGTCGGCTGCACAGTCATTGAAATGCTCACAGCCATgtaagtgttg ... atcttgtcagGCACCCTTGGCCGGACATTGACAACACTTGGAGCGCAATCTTCCACATTGC
EST: GCTGATATATGGAGCGTCGGCTGCACAGTCATTGAAATGCTCACAGCCAT GCACCCTTGGCCGGACATTGACAACACTTGGAGCGCAATCTTCCACATTGCEST: gi|169036894|gb|FE444985.1|FE444985
genomic: GCTGATATATGGAGCGTCGGCTGCACAGTCATTGAAATGCTCACAGCCATgtaagtgttg ... atcttgtcagGCACCCTTGGCCGGACATTGACAACACTTGGAGCGCAATCTTCCACATTGC
EST: GCTGATATATGGAGCGTCGGCTGCACAGTCATTGAAATGCTCACAGCCAT GCACCCTTGGCCGGACATTGACAACACTTGGAGCGCAATCTTCCACATTGCEST: gi|169029910|gb|FE441078.1|FE441078
genomic: GCTGATATATGGAGCGTCGGCTGCACAGTCATTGAAATGCTCACAGCCATgtaagtgttg ... atcttgtcagGCACCCTTGGCCGGACATTGACAACACTTGGAGCGCAATCTTCCACATTGC
EST: GCTGATATATGGAGCGTCGGCTGCACAGTCATTGAAATGCTCACAGCCAT GCACCCTTGGCCGGACATTGACAACACTTGGAGCGCAATCTTCCACATTGC
genomic: GCTGATATATGGAGCGTCGGCTGCACAGTCATTGAAATGCTCACAGCCATgtaagtgttg ... atcttgtcagGCACCCTTGGCCGGACATTGACAACACTTGGAGCGCAATCTTCCACATTGC
agcaaagcgtctttgtgtccttctggcaaaactaaagttttggaaatcttgtcagGCACCCTTGGCCGGACATTGACAACACTTGGAGCGCAATCTTCCACATTGCAAAGGCGAGCAGTGGGCCGCCAATCCCCGAGCACGGCTCGGGCTGTGTC
aactaaa putative branch site (score: 3)
tcttgtc putative PPT
aaaactaaagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgttgagagtaagttccttggttttttagctcttccatagttcttcaagtttcgttcgatcggtttctctccttccttttcgtcgctctcgcacagcttccaagttctagttcttcaagtatctagcaaagcgtctttgtgtccttctggcaaaactaaagttttggaaatcttgtcagGCACCCTTGGCCGGACATTGACAACACTTGGAGCGCAATCTTCCACATTGCAAAGGCGAGCAGTGGGCCGCCAATCCCCGAGCACGGCTCGGGCTGTGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG