1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gcaagctgcttattttatcttctcatatcacctctttcttttaaacagCATGCTGGAGAGATTCGGTCGGTTTAGTGAGCCTCTCGTCCGAGTTTACACCCGGCAGCTGCTGCTCGGCCTCCAGTACCTCCACGAGAACAGGATCGTC
species | Selaginella moellendorffii |
transcript | EFJ38649 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAAGCTTATACATATTCCTCGAGTACGTTTCAGGCGGATCAATCCAAAG CATGCTGGAGAGATTCGGTCGGTTCAGTGAGCCTCTCGTCCGAGTTTACACEST: gi|169036895|gb|FE444986.1|FE444986
genomic: GGAAGCTTGTACATATTCCTCGAGTACGTTTCAGGCGGATCAATCCAAAGgcaagctgct ... ttttaaacagCATGCTGGAGAGATTCGGTCGGTTTAGTGAGCCTCTCGTCCGAGTTTACAC
EST: GGAAGCTTGTACATATTCCTCGAGTACGTTTCAGGCGGATCAATCCAAAG CATGCTGGAGAGATTCGGTCGGTTTAGTGAGCCTCTCGTCCGAGTTTACACEST: gi|169036894|gb|FE444985.1|FE444985
genomic: GGAAGCTTGTACATATTCCTCGAGTACGTTTCAGGCGGATCAATCCAAAGgcaagctgct ... ttttaaacagCATGCTGGAGAGATTCGGTCGGTTTAGTGAGCCTCTCGTCCGAGTTTACAC
EST: ATCAATCCAAAG CATGCTGGAGAGATTCGGTCGGTTTAGTGAGCCTCTCGTCCGAGTTTACACEST: gi|169029910|gb|FE441078.1|FE441078
genomic: ATCAATCCAAAGgcaagctgct ... ttttaaacagCATGCTGGAGAGATTCGGTCGGTTTAGTGAGCCTCTCGTCCGAGTTTACAC
EST: GGAAGCTTATACATATTCCTCGAGTACGTTTCAGGCGGATCAATCCAAAG CATGCTGGAGAGATTCGGTCGGTTCAGTGAGCCTCTCGTCCGAGTTTACAC
genomic: GGAAGCTTGTACATATTCCTCGAGTACGTTTCAGGCGGATCAATCCAAAGgcaagctgct ... ttttaaacagCATGCTGGAGAGATTCGGTCGGTTTAGTGAGCCTCTCGTCCGAGTTTACAC
gcaagctgcttattttatcttctcatatcacctctttcttttaaacagCATGCTGGAGAGATTCGGTCGGTTTAGTGAGCCTCTCGTCCGAGTTTACACCCGGCAGCTGCTGCTCGGCCTCCAGTACCTCCACGAGAACAGGATCGTC
cttattttatcttctc CT-rich tract
ttattttatcttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagctgcttattttatcttctcatatcacctctttcttttaaacagCATGCTGGAGAGATTCGGTCGGTTTAGTGAGCCTCTCGTCCGAGTTTACACCCGGCAGCTGCTGCTCGGCCTCCAGTACCTCCACGAGAACAGGATCGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT