1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgctgcaaaaacttttctccgcgatcacgagatttgtttcttgatttttgcacaaacttcgttgatgtttgatgcagTTGCGTGGTCATCGAGGACAGTGGGATTGGCCTCCAAGCTGCCAAAGCTGCCGGGATGACTTGCATTGTCACCAAGAGCGT
species | Selaginella moellendorffii |
transcript | EFJ38583 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCCATCTATACNTTGGCTGCTACATCTNTCCAAGTTGAGCCTTCGAG TTGCGTGGTCATCGAGGACAGTGGGATTGGCCTCCAATCTGCCCAAGCTGCEST: gi|169064587|gb|FE471318.1|FE471318
genomic: GCCATCTACACTTTGGCTGCTACATCTTTCCAAGTTGAGCCTTCGAGgtgctgcaaa ... tttgatgcagTTGCGTGGTCATCGAGGACAGTGGGATTGGCCTCCAAGCTGCCAAAGCTGC
EST: GCCATCTATACTTTGGCTGCTACATCTTTCCAAGTTGAGCCTTCGAG TTGCGTGGTCATCGAGGACAGTGGGATTGGCCTCCAAEST: gi|169042044|gb|FE448510.1|FE448510
genomic: GCCATCTACACTTTGGCTGCTACATCTTTCCAAGTTGAGCCTTCGAGgtgctgcaaa ... tttgatgcagTTGCGTGGTCATCGAGGACAGTGGGATTGGCCTCCAA
EST: GCCATCTATACTTTGGCTGCTACATCTTTCCAAGTTGAGCCTTCGAG TTGCGTGGTCATCGAGGACAGTGGGATTGGCCTCCAATCTGCCAAAGCTGCEST: gi|169064586|gb|FE471317.1|FE471317
genomic: GCCATCTACACTTTGGCTGCTACATCTTTCCAAGTTGAGCCTTCGAGgtgctgcaaa ... tttgatgcagTTGCGTGGTCATCGAGGACAGTGGGATTGGCCTCCAAGCTGCCAAAGCTGC
EST: GCCATCTATACTTTGGCTGCTACATCTTTCCAAGTTGAGCCTTCGAG TTGCGTGGTCATCGAGGACAGTGGGATTGGCCTCCAATCTGCCAAAGCTGC
genomic: GCCATCTACACTTTGGCTGCTACATCTTTCCAAGTTGAGCCTTCGAGgtgctgcaaa ... tttgatgcagTTGCGTGGTCATCGAGGACAGTGGGATTGGCCTCCAAGCTGCCAAAGCTGC
gatcacgagatttgtttcttgatttttgcacaaacttcgttgatgtttgatgcagTTGCGTGGTCATCGAGGACAGTGGGATTGGCCTCCAAGCTGCCAAAGCTGCCGGGATGACTTGCATTGTCACCAAGAGCGT
ttgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctgcaaaaacttttctccgcgatcacgagatttgtttcttgatttttgcacaaacttcgttgatgtttgatgcagTTGCGTGGTCATCGAGGACAGTGGGATTGGCCTCCAAGCTGCCAAAGCTGCCGGGATGACTTGCATTGTCACCAAGAGCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC