1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttaagagatccagtgttggaatgttttcttccctgtggttgtgttcctgattggtctcgcctcgcagGCCATCTACACTTTGGCTGCTACATCTTTCCAAGTTGAGCCTTCGAG
species | Selaginella moellendorffii |
transcript | EFJ38583 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCATTTCCATCTTCGCTGGCGATGTAGTCCCTCGCAAAAAACCAGATCCA GCCATCTATACNTTGGCTGCTACATCTNTCCAAGTTGAGCCTTCGAGEST: gi|169064587|gb|FE471318.1|FE471318
genomic: CCATTTCCATCTTCGCCGGCGATGTAGTCCCTCGCAAAAAACCAGATCCAgttaagagat ... cgcctcgcagGCCATCTACACTTTGGCTGCTACATCTTTCCAAGTTGAGCCTTCGAG
EST: CCATTTCCATCTTCGCTGGCGATGTAGTCCCTCGCAAAAAACCAGATCCA GCCATCTATACTTTGGCTGCTACATCTTTCCAAGTTGAGCCTTCGAGEST: gi|169042044|gb|FE448510.1|FE448510
genomic: CCATTTCCATCTTCGCCGGCGATGTAGTCCCTCGCAAAAAACCAGATCCAgttaagagat ... cgcctcgcagGCCATCTACACTTTGGCTGCTACATCTTTCCAAGTTGAGCCTTCGAG
EST: CCATTTCCATCTTCGCTGGCGATGTAGTCCCTCGCAAAAAACCAGATCCA GCCATCTATACTTTGGCTGCTACATCTTTCCAAGTTGAGCCTTCGAGEST: gi|169101813|gb|FE501279.1|FE501279
genomic: CCATTTCCATCTTCGCCGGCGATGTAGTCCCTCGCAAAAAACCAGATCCAgttaagagat ... cgcctcgcagGCCATCTACACTTTGGCTGCTACATCTTTCCAAGTTGAGCCTTCGAG
EST: CCATTTCCATCTTCGCCGGCGATGTAGTCCCTCGCAAAAAACCAGATCCA GCCATCTACACTTTGGCTGCTACATCTTTCCAAGTTGAGCCTTCGAGTTGCEST: gi|169064586|gb|FE471317.1|FE471317
genomic: CCATTTCCATCTTCGCCGGCGATGTAGTCCCTCGCAAAAAACCAGATCCAgttaagagat ... cgcctcgcagGCCATCTACACTTTGGCTGCTACATCTTTCCAAGTTGAGCCTTCGAGTTGC
EST: CCATTTCCATCTTCGCTGGCGATGTAGTCCCTCGCAAAAAACCAGATCCA GCCATCTATACTTTGGCTGCTACATCTTTCCAAGTTGAGCCTTCGAG
genomic: CCATTTCCATCTTCGCCGGCGATGTAGTCCCTCGCAAAAAACCAGATCCAgttaagagat ... cgcctcgcagGCCATCTACACTTTGGCTGCTACATCTTTCCAAGTTGAGCCTTCGAG
gtgttggaatgttttcttccctgtggttgtgttcctgattggtctcgcctcgcagGCCATCTACACTTTGGCTGCTACATCTTTCCAAGTTGAGCCTTCGAG
tcctgat putative branch site (score: 10)
tctcgcctc putative PPT
aatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaagagatccagtgttggaatgttttcttccctgtggttgtgttcctgattggtctcgcctcgcagGCCATCTACACTTTGGCTGCTACATCTTTCCAAGTTGAGCCTTCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT