1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagcaatgtcgtatacattttctgatgacgatgtaagtatcttgcaacagGATTTTAATCGACCTTCCACAAGCATCAAGCCGAGTGAAGATACTCGGAGCTATTTTATTGAAAGAGAACCTGGAACCGAATTTTGACATGATAGAGCTG
species | Selaginella moellendorffii |
transcript | EFJ35374 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AATCGCCCGTTCGACCTTGATGATGCAGTCATACGACGTTTACCACGGAG GATTTTAATCGACCTTCCACAAGCATCAAGCCGAGTGAAGATACTCGGAGCEST: gi|169040368|gb|FE448407.1|FE448407
genomic: AATCGCCCGTTCGACCTTGATGATGCAGTCATACGACGTTTACCACGGAGgtgagcaatg ... cttgcaacagGATTTTAATCGACCTTCCACAAGCATCAAGCCGAGTGAAGATACTCGGAGC
EST: AATCGCCCGTTCGACCTTGATGATGCAGTCATACGACGTTTACCACGGAG GATTTTAATCGACCTTCCACAAGCATCAAGCCGAGTGAAGATACTTGGAGCEST: gi|169083667|gb|FE491435.1|FE491435
genomic: AATCGCCCGTTCGACCTTGATGATGCAGTCATACGACGTTTACCACGGAGgtgagcaatg ... cttgcaacagGATTTTAATCGACCTTCCACAAGCATCAAGCCGAGTGAAGATACTCGGAGC
EST: AATCGCCCGTTCGACCTTGATGATGCAGTCATACGACGTTTACCACGGAG GATTTTAATCGACCTTCCACAAGCATCAAGCCGAGTGAAGATACTTGGAGC
genomic: AATCGCCCGTTCGACCTTGATGATGCAGTCATACGACGTTTACCACGGAGgtgagcaatg ... cttgcaacagGATTTTAATCGACCTTCCACAAGCATCAAGCCGAGTGAAGATACTCGGAGC
gtgagcaatgtcgtatacattttctgatgacgatgtaagtatcttgcaacagGATTTTAATCGACCTTCCACAAGCATCAAGCCGAGTGAAGATACTCGGAGCTATTTTATTGAAAGAGAACCTGGAACCGAATTTTGACATGATAGAGCTG
ttctgat putative branch site (score: 4)
tatacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcaatgtcgtatacattttctgatgacgatgtaagtatcttgcaacagGATTTTAATCGACCTTCCACAAGCATCAAGCCGAGTGAAGATACTCGGAGCTATTTTATTGAAAGAGAACCTGGAACCGAATTTTGACATGATAGAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT