1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtacgtaagactcttcacgatctggactgaagtttcacgctttttctcagGTGTGTGCCTCTGTAGCGTTTGATGCATTGAGTATGAACGAGCTCAGGCATTGGAACGAGCAATATGGCGAGGGAGGAAGTAGAAAGAAGAGGAACTTTG
species | Selaginella moellendorffii |
transcript | EFJ35374 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CGATGTTGCGACCGATAACTCTAGATGATTTCCGGCAATCGATGACACAG GTGTGTGCCTCTGTAGCGTTTGATGCATTGAGTATGAACGAGCTCAGGCATEST: gi|169040368|gb|FE448407.1|FE448407
genomic: CGATGTTGCGACCGATAACTCTAGATGATTTCCGGCAATCGATGACACAGgtacgtaaga ... tttttctcagGTGTGTGCCTCTGTAGCGTTTGATGCATTGAGTATGAACGAGCTCAGGCAT
EST: CGATGTTGCGACCGATAACTCTAGATGATTTCCGGCAATCGATGACACAG GTGTGTGCCTCTGTAGCGTTTGATGCATTGAGTATGAACGAGCTCAGGCATEST: gi|169083667|gb|FE491435.1|FE491435
genomic: CGATGTTGCGACCGATAACTCTAGATGATTTCCGGCAATCGATGACACAGgtacgtaaga ... tttttctcagGTGTGTGCCTCTGTAGCGTTTGATGCATTGAGTATGAACGAGCTCAGGCAT
EST: CGATGTTGCGACCGATAACTCTAGATGATTTCCGGCAATCGATGACACAG GTGTGTGCCTCTGTAGCGTTTGATGCATTGAGTATGAACGAGCTCAGGCAT
genomic: CGATGTTGCGACCGATAACTCTAGATGATTTCCGGCAATCGATGACACAGgtacgtaaga ... tttttctcagGTGTGTGCCTCTGTAGCGTTTGATGCATTGAGTATGAACGAGCTCAGGCAT
gtacgtaagactcttcacgatctggactgaagtttcacgctttttctcagGTGTGTGCCTCTGTAGCGTTTGATGCATTGAGTATGAACGAGCTCAGGCATTGGAACGAGCAATATGGCGAGGGAGGAAGTAGAAAGAAGAGGAACTTTG
tttcacgctttttctc CT-rich tract
tttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtaagactcttcacgatctggactgaagtttcacgctttttctcagGTGTGTGCCTCTGTAGCGTTTGATGCATTGAGTATGAACGAGCTCAGGCATTGGAACGAGCAATATGGCGAGGGAGGAAGTAGAAAGAAGAGGAACTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA