1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagatatgttagaatgtgttcttcgacttttctaatgtttattttctttcagACTTGCTAAAGTTACGAAAGAGGGAAAGTATATCTCCTCGGATGTCCCAAAGCAGCTCGCTTACGGAGCAATGGTTTATGTTAGACAGAGCATAGTGTCT
species | Selaginella moellendorffii |
transcript | EFJ35164 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTTTTGCGTTTTGATCAAGTTCGCATACCTCGAAATAACATGCTAATGAA ACTTGCTAAAGTTACGAAAGAGGGAAAGTATATCTCCTCGGATGTCCCAAAEST: gi|169063685|gb|FE471791.1|FE471791
genomic: CTTTTGCGTTTTGATCAAGTTCGCATACCTCGAAATAACATGCTAATGAAgtaagatatg ... tttctttcagACTTGCTAAAGTTACGAAAGAGGGAAAGTATATCTCCTCGGATGTCCCAAA
EST: CTTTTGCGTTTTGATCAAGTTCGCATACCTCGAAATAACATGCTAATGAA ACTTGCTAAAGTTACGAAAGAGGGAAAGTATATCTCCTCGGATGTCCCANAEST: gi|169023125|gb|FE429177.1|FE429177
genomic: CTTTTGCGTTTTGATCAAGTTCGCATACCTCGAAATAACATGCTAATGAAgtaagatatg ... tttctttcagACTTGCTAAAGTTACGAAAGAGGGAAAGTATATCTCCTCGGATGTCCCAAA
EST: CTTTTGCGTTTTGATCAAGTTCGCATACCTCGAAATAACATGCTAATGAA ACTTGCTAAAGTTACGAAAGAGGGAAAGTATATCTCCTCGGATGTCCCANAEST: gi|169024575|gb|FE435683.1|FE435683
genomic: CTTTTGCGTTTTGATCAAGTTCGCATACCTCGAAATAACATGCTAATGAAgtaagatatg ... tttctttcagACTTGCTAAAGTTACGAAAGAGGGAAAGTATATCTCCTCGGATGTCCCAAA
EST: CTTTTGCGTTTTGATCAAGTTCGCATACCTCGAAATAACATGCTAATGAA ACTTGCTAAAGTTACGAAAGAGGGAAAGTATATCTCCTCGGATGTCCCANAEST: gi|169099715|gb|FE503112.1|FE503112
genomic: CTTTTGCGTTTTGATCAAGTTCGCATACCTCGAAATAACATGCTAATGAAgtaagatatg ... tttctttcagACTTGCTAAAGTTACGAAAGAGGGAAAGTATATCTCCTCGGATGTCCCAAA
EST: CTTTTGCGTTTTGATCAAGTTCGCATACCTCGAAATAACATGCTAATGAA ACTTGCTAAAGTTACGAAAGAGGGAAAGTATATCTCCTCGGATGTCCCAAAEST: gi|169025869|gb|FE433168.1|FE433168
genomic: CTTTTGCGTTTTGATCAAGTTCGCATACCTCGAAATAACATGCTAATGAAgtaagatatg ... tttctttcagACTTGCTAAAGTTACGAAAGAGGGAAAGTATATCTCCTCGGATGTCCCAAA
EST: CTTTTGCGTTTTGATCAAGTTCGCATACCTCGAAATAACATGCTAATGAA ACTTGCTAAAGTTACGAAAGAGGGAAAGTATATCTCCTCGGATGTCCCAAAEST: gi|169037439|gb|FE443333.1|FE443333
genomic: CTTTTGCGTTTTGATCAAGTTCGCATACCTCGAAATAACATGCTAATGAAgtaagatatg ... tttctttcagACTTGCTAAAGTTACGAAAGAGGGAAAGTATATCTCCTCGGATGTCCCAAA
EST: CTTTTGCGTTTTGATCAAGTTCGCATACCTCGAAATAACATGCTAATGAA ACTTGCTAAAGTTACGAAAGAGGGAAAGTATATCTCCTCGGATGTCCCAAA
genomic: CTTTTGCGTTTTGATCAAGTTCGCATACCTCGAAATAACATGCTAATGAAgtaagatatg ... tttctttcagACTTGCTAAAGTTACGAAAGAGGGAAAGTATATCTCCTCGGATGTCCCAAA
gtaagatatgttagaatgtgttcttcgacttttctaatgtttattttctttcagACTTGCTAAAGTTACGAAAGAGGGAAAGTATATCTCCTCGGATGTCCCAAAGCAGCTCGCTTACGGAGCAATGGTTTATGTTAGACAGAGCATAGTGTCT
ttctaat putative branch site (score: 1)
tgtttattttctttc CT-rich tract
ttttctaatgtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatatgttagaatgtgttcttcgacttttctaatgtttattttctttcagACTTGCTAAAGTTACGAAAGAGGGAAAGTATATCTCCTCGGATGTCCCAAAGCAGCTCGCTTACGGAGCAATGGTTTATGTTAGACAGAGCATAGTGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA