1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CCTACTCGTGTCCCGAGCTGGAGACTTTCTCTCCACGGGATGCTTGACTCCAACGCAAGTAGCGCTGGCAAAACAGCAGCTCCAGAACTTATACACGGAGgtaacgccacaaactcgatcctttttggaagccatcttcaccatccttctgtgttcgtccag
species | Selaginella moellendorffii |
transcript | EFJ35164 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CAACGCAAGTAGCGCTGGCAAAACAGCAGCTCCAGAACTTATACACGGAG GTGCGGCCAAACGCCGTGGCTCTAGTCGACGCGTTTGGTCATACTGACCACEST: gi|169063684|gb|FE471790.1|FE471790
genomic: CAACGCAAGTAGCGCTGGCAAAACAGCAGCTCCAGAACTTATACACGGAGgtaacgccac ... gttcgtccagGTGCGGCCAAACGCCGTGGCTCTAGTCGACGCGTTTGGTCATACTGACCAC
EST: CAACGCAAGTAGCGCTGGCAAAACAGCAGCTCCAGAACTTATACACGGAG GTGCGGCCAAACGCCGTGGCTCTAGTCGACGCGTTTGGTCATACTGACCACEST: gi|169025868|gb|FE433167.1|FE433167
genomic: CAACGCAAGTAGCGCTGGCAAAACAGCAGCTCCAGAACTTATACACGGAGgtaacgccac ... gttcgtccagGTGCGGCCAAACGCCGTGGCTCTAGTCGACGCGTTTGGTCATACTGACCAC
EST: CAACGCAAGTAGCGCTGGCAAAACAGCAGCTCCAGAACTTATACACGGAG GTGCGACCAAACGCCGTGGCTCTAGTCGACGCGTTTGGTCATACTGACCACEST: gi|169024574|gb|FE435682.1|FE435682
genomic: CAACGCAAGTAGCGCTGGCAAAACAGCAGCTCCAGAACTTATACACGGAGgtaacgccac ... gttcgtccagGTGCGGCCAAACGCCGTGGCTCTAGTCGACGCGTTTGGTCATACTGACCAC
EST: CAACGCAAGTAGCGCTGGCAAAACAGCAGCTCCAGAACTTATACACGGAG GTGCGACCAAACGCCGTGGCTCTAGTCGACGCGTTTGGTCATACTGACCACEST: gi|169062875|gb|FE472885.1|FE472885
genomic: CAACGCAAGTAGCGCTGGCAAAACAGCAGCTCCAGAACTTATACACGGAGgtaacgccac ... gttcgtccagGTGCGGCCAAACGCCGTGGCTCTAGTCGACGCGTTTGGTCATACTGACCAC
EST: CAACGCAAGTAGCGCTGGCAAAACAGCAGCTCCAGAACTTATACACGGAG GTGCGACCAAACGCCGTGGCTCTAGTCGACGCGTTTGGTCATACTGACCACEST: gi|169023124|gb|FE429176.1|FE429176
genomic: CAACGCAAGTAGCGCTGGCAAAACAGCAGCTCCAGAACTTATACACGGAGgtaacgccac ... gttcgtccagGTGCGGCCAAACGCCGTGGCTCTAGTCGACGCGTTTGGTCATACTGACCAC
EST: CAACGCAAGTAGCGCTGGCAAAACAGCAGCTCCAGAACTTATACACGGAG GTGCGACCAAACGCCGTGGCTCTAGTCGACGCGTTTGGTCATACTGACCACEST: gi|169099714|gb|FE503111.1|FE503111
genomic: CAACGCAAGTAGCGCTGGCAAAACAGCAGCTCCAGAACTTATACACGGAGgtaacgccac ... gttcgtccagGTGCGGCCAAACGCCGTGGCTCTAGTCGACGCGTTTGGTCATACTGACCAC
EST: CAACGCAAGTAGCGCTGGCAAAACAGCAGCTCCAGAACTTATACACGGAG GTGCGACCAAACGCCGTGGCTCTAGTCGACGCGTTTGGTCATACTGACCACEST: gi|169088402|gb|FE495448.1|FE495448
genomic: CAACGCAAGTAGCGCTGGCAAAACAGCAGCTCCAGAACTTATACACGGAGgtaacgccac ... gttcgtccagGTGCGGCCAAACGCCGTGGCTCTAGTCGACGCGTTTGGTCATACTGACCAC
EST: CAACGCAAGTAGCGCTGGCAAAACAGCAGCTCCAGAACTTATACACGGAG GTGCGGCCAAACGCCGTGGCTCTAGTCGACGCGTTTGGTCATACTGACCACEST: gi|169026786|gb|FE436360.1|FE436360
genomic: CAACGCAAGTAGCGCTGGCAAAACAGCAGCTCCAGAACTTATACACGGAGgtaacgccac ... gttcgtccagGTGCGGCCAAACGCCGTGGCTCTAGTCGACGCGTTTGGTCATACTGACCAC
EST: CAACGCAAGTAGCGCTGGCAAAACAGCAGCTCCAGAACTTATACACGGAG GTGCGACCAAACGCCGTGGCTCTAGTCGACGCGTTTGGTCATACTGACCAC
genomic: CAACGCAAGTAGCGCTGGCAAAACAGCAGCTCCAGAACTTATACACGGAGgtaacgccac ... gttcgtccagGTGCGGCCAAACGCCGTGGCTCTAGTCGACGCGTTTGGTCATACTGACCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTACTCGTGTCCCGAGCTGGAGACTTTCTCTCCACGGGATGCTTGACTCCAACGCAAGTAGCGCTGGCAAAACAGCAGCTCCAGAACTTATACACGGAGgtaacgccacaaactcgatcctttttggaagccatcttcaccatccttctgtgttcgtccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC