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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgctcacgcatagttatctcttcttttttttccctgcttacactctcttatttagATTGTTACGCTCTGGTACAGAGCTCCGGAGATACTTCTCGGAGCTTCACACTACTCCGTCCCCGTGGACATGTGGTCCGTCGGGTGTATATTTG

Basic information

species Selaginella moellendorffii
transcript EFJ32755
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ32755 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: EDO97594 (Chlamydomonas reinhardtii), 3'ss of exon 4
--------------------------------------------------------------------------------------gtttgctcacgcatagttatctcttcttttttttccctgctt---acactctcttatt-----tagATTGTTACGCTCTGGTACAGAGCTCCGGAGATACTTCTCGGAGCTTCACACTACTCCGTCCCCGTGGACATGTGGTCCGTCGGGTGTATATTTG------
                                                                                      | ||      | ||  || |   |||  |   |  |   |||   ||     |    |      ||||||| || || |||||| | || || ||| | || || || ||  | |||||| ||  |||||||||||||||||||||||| || || || |      
gtgtggcgggccgcatccccgtgtcctaggctgggcccagcttccagccgtagtgttggtcgctttgcagcacacggcgtgccctcgcttcgcactgtatgattgttgtttccctgactctcaatcttggcacgtctccccgctgtcaacagATTGTGACCCTATGGTACCGCGCGCCCGAGGTGCTGCTGGGCGCCACCCACTACGCCACCCCCGTGGACATGTGGTCCGTCGGCTGCATCTTCGCTGAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctcacgcatagttatctcttcttttttttccctgcttacactctcttatttagATTGTTACGCTCTGGTACAGAGCTCCGGAGATACTTCTCGGAGCTTCACACTACTCCGTCCCCGTGGACATGTGGTCCGTCGGGTGTATATTTG
                                  tgcttac  putative branch site (score: 2)
             ttatctcttctttttt  CT-rich tract
                    ttctttttttt  TA-rich tract