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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagactgttcgaagattttctcagttggattgctcttttctcagcggctgatcaaagatgttgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC

Basic information

species Selaginella moellendorffii
transcript EFJ31718
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: LOC_Os01g54100.1 (Oryza sativa), 3'ss of exon 2
----------gtagactgttcgaagattttctcagttggattgctcttttctcagcggctgatcaaagatgttgt------------cagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
            || || || | | |  |   |   |         |  | | | ||| |||  | | || | ||             |||| ||  | ||||||||||| |||| |||||||||||||||| |||||||||| || || ||||| ||||||| 
gtatttagtgccagcctatttgtaaaactgtacttgtaaccgtggatggtattaacggttgaaaataaatatcgtgctttcgaatggtagGTGGCGCTAAAGTTTGAACATAGAACCAGTAAAGGATGCAACCATGGGCCTCCTTACGAATGGCAGGTTTACAA

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: LOC_Os03g57940.3 (Oryza sativa), 3'ss of exon 3
-------------gtagactgttcgaagattt--tctcagttggatt-gctcttttctcagcggctgatcaaagatgttgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
               |      | | | | |    ||| ||| | || | |  ||| |      ||||   || ||  ||| |||||||  | || ||||| ||| |||||||||||||||| |||||||| ||||| || |||||||| ||||||  
gtttcatttcttaccacctcaattggacactgaagctctgttagtttagttagtttttagatatctgaatgaatatcctgt-agGTTGCGCTTAAATTTGAGCACCGAAGCAGTAAAGGATGTAACTATGGCCCTCCATACGAGTGGCAGGTTTACCA

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: LOC_Os03g57940.4 (Oryza sativa), 3'ss of exon 3
-------------gtagactgttcgaagatttt--ctcagttggatt-gctcttttctcagcggctgatcaaagatgttgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC--------------------------
               |      | | | | |    ||| ||| | || | |  ||| |      ||||   || ||  ||| |||||||  | || ||||| ||| |||||||||||||||| |||||||| ||||| || |||||||| ||||||                            
gtttcatttcttaccacctcaattggacactgaagctctgttagtttagttagtttttagatatctgaatgaatatcctgt-agGTTGCGCTTAAATTTGAGCACCGAAGCAGTAAAGGATGTAACTATGGCCCTCCATACGAGTGGCAGGTTTACCAGTAAGAATTTCACACAATCTATCCCT

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: LOC_Os07g07560.1 (Oryza sativa), 3'ss of exon 3
gtagactgttcgaagat------tttctcagttggattgctcttttctcagcggc-tgatc-aaagatg---ttgt-cagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
||   || |   || |       |||  | ||     |   |||||| ||        ||| ||| |||    | |  ||||||| |||||| |||| ||  ||| ||||||||| ||||| |||||  | || ||||||||||||||||||  
gtttgctctctaaatagaatatattttgctgtaaatatatccttttcacattaatacaatctaaaaatgaccctatgtagGTTGCATTGAAGCTTGAGCATCGAAACAGTAAAGGGTGCAATTATGGTGCCCCCTATGAGTGGCAAGTTTACCA

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: LOC_Os01g56580.2 (Oryza sativa), 3'ss of exon 3
--------------------gtagactgttcgaagattttctcagttggattgctc--ttttctcagcggctgatcaaagatgttgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
                     |   || ||  ||  |||   |  |   ||  |    |  |   |   | ||       || ||| ||||| |||||||| || || ||| | | |||||| || ||||| ||||| ||||| ||||||||||||||||| | 
gtctaaccccatcctttttccttttcttttaaaaagtttctgctataatatcacatggtggtgataatagatggattctcatattg-cagGTAGCTTTGAAATTCGAGCACCGCAACAGTAAGGGTTGCAATTATGGCCCTCCATATGAGTGGCAAGTTTATAG

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: LOC_Os05g11140.1 (Oryza sativa), 3'ss of exon 2
---------------gtagactgttcgaagattttctcagttggattgctcttttctcagcggctgatcaaagatgt-----tgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
                  ||    |     |||| |  | ||  | |    |  |  ||     |  |||    | |     |  ||||| ||  | || ||||||||  ||| ||| ||||| ||||| |||||  |||| ||||||||||||||||||| 
gtcagctcttctaatccggatgtctttttcatttccatatttaaaatatcatagttgcattta-tattcacgcttttctttataccagGTGGCAATAAAATTTGAACATCGAACCAGCAAAGGCTGCAATTATGGAGCTCCCTATGAGTGGCAAGTTTACAA

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G116086_T01 (Zea mays), 3'ss of exon 3
--------gtagactgttcgaagattttctcagttggattgctcttttctcagcggctgatcaaagatgttgtc--agGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
         |||     ||    | || || |    |||  |   ||     |  | |   | || |  |   |  ||||||||||||| ||||| ||| ||| ||| || || ||||| ||||| ||||| ||||||||||||||||| | 
gtttatatatagttcactctggaagttacttaaaaagataccctcttctatggaagttacactaatacatgaccacagGTTGCTTTGAAATTTGAGCACCGAAACAGCAAGGGCTGCAATTATGGCCCTCCATATGAGTGGCAAGTTTATAG

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G164265_T03 (Zea mays), 3'ss of exon 3
gtagactgttcgaagattttctcagttggattgctcttttctcagcg---gctgatcaa------agatgttgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
||       |   | ||||| | | || ||| | | |||||    |        || ||      | || ||   |||| || ||||| || || ||  ||| ||||||||||||||| ||||| ||||| ||||||||||| ||||| | 
gtttgtcacttacacattttatgaatttgatggattttttccttacataaatccattaaatggtaaaatttttgtagGTCGCATTGAAATTAGAGCATCGAAACAGTAAAGGATGCAATTATGGCCCTCCATATGAGTGGCAGGTTTATAA

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G116151_T03 (Zea mays), 3'ss of exon 2
----gtagactgttcgaagattttctcagttggattgctcttttct-cagcggc-tgatcaaagatgtt---gtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
     ||  |  |     || ||| | | |   |||  || |  || ||   || | | |     | ||      |||||||  | || ||||||||  ||| ||| ||||| |||||||||||  |||| ||||||||||||||||||| 
gtctttatgccttctctggaatttttaattgtaattcatcgtagctgcattagcataaacgttttttttcatactagGTTGCAATCAAATTTGAACATCGAACCAGCAAAGGTTGCAACTATGGTGCTCCTTATGAGTGGCAAGTTTACAA

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G037923_T02 (Zea mays), 3'ss of exon 3
gtagactgttcgaagattttctcagttggattgctcttttctcagcg----gctgatcaa----agatgttgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
||       |  ||  |||| | | || ||||  | ||| |    |      |  |||||    |  | ||   ||||||| ||||| || || ||  | | ||||||||||||||| ||||| || || ||||||||||||||||| | 
gtttgtcactt-aaccttttatgaatttgattcatttttcccttacataaatccaatcaattgtaattttttgtagGTTGCATTGAAATTCGAGCATCGTAACAGTAAAGGATGCAATTATGGCCCCCCATATGAGTGGCAAGTTTATAA

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G342407_T01 (Zea mays), 3'ss of exon 4
gtagactgttcgaagattttctcagttggattgctcttttctcagcg---gctgatcaaa----gatgttgt-cagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
||       |   | ||||| | | || ||| | | |||||    |        || |||     || || |  |||| || ||||| || || ||  ||| ||||||||||||||| ||||| ||||| ||||||||||| ||||| | 
gtttgtcacttacacattttatgaatttgatggattttttccttacataaatccattaaatggtaattttttgtagGTCGCATTGAAATTAGAGCATCGAAACAGTAAAGGATGCAATTATGGCCCTCCATATGAGTGGCAGGTTTATAA

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GRMZM2G355274_T01 (Zea mays), 3'ss of exon 3
gtagactgttcgaagattttctcagttggattgctcttttctcagcg---gctgatcaaa----gatgttgt-cagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
||       |   | ||||| | | || ||| | | | |||    |        || |||     || || |  |||  || ||||| || || ||  ||| ||||||||||||||| ||||| ||||| ||||||||||| ||||| | 
gtttgtcacttacacattttatgaatttgatggatttgttccttacataaatccattaaatggtaattttttgtagGACGCATTGAAATTAGAGCATCGAAACAGTAAAGGATGCAATTATGGCCCTCCATATGAGTGGCAGGTTTATAA

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA16G04580.1 (Glycine max), 3'ss of exon 3
------------------------------------gtagactgttcgaagattttctcagttggattgctcttttctcagcggctgatcaaagatgttgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
                                     |  | | ||     |  |   | ||  |||   |  ||| |       |    ||   ||||  ||||||||  | |||||||| ||||||| ||| ||||| ||||||||||||||||| |||||||||||||| |||| 
gtattattaaggattccagtttctcattaaggttgaatgaagtattaatgaacctatactgtatgatacattgttttttcttattt---taactttgtttacagGTTGCACTTAAGTTTGAGCACAGAAACAGCAAAGGTTGCAACTATGGGCCTCCTTATGAGTGGCAAGTATACAG

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA04G09080.1 (Glycine max), 3'ss of exon 2
-----------------------------gtagactgttcgaagattttctcagttggattgctcttttctcagcggctgatcaaagatgttgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
                               ||| |||       |  |     |||||||  || ||  | |     || || |   || |   |||| || || || ||||| || |||||||| ||||| ||||| ||||| ||||| ||||||||||| ||||||| 
gtatggtgttagcgtgttgatatttggttaaagagtgtgtttgattgatgcatattggatttgtcattattgacgtattgctctat--tgattgtagGTAGCCTTAAAATTTGAGCATAGAAGCAGCAAAGGGTGCAATTATGGACCTCCATATGAGTGGCAGGTTTACAA

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA08G47680.2 (Glycine max), 3'ss of exon 2
gtagactgttcgaagattttctca--gttggattgctcttttct--cagcggctgat-caaagatgttgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
||| |   |||     ||  ||||  ||| ||    | || |    ||  | ||||| |     |||| |||||| |||||||| ||||| ||||| | ||| ||||| || |||||||| ||||| || ||||||||||| |||| 
gtaaaagcttctcttgttacctcactgtttgaacaattttctacggcattgactgattctttcgtgtt-tcagGTGGCTTTGAAATTTGAGCACAGGAACAGCAAAGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTGTACAA

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA10G44050.1 (Glycine max), 3'ss of exon 2
----------------------------------gtagactgttcgaagattttctcagttggattgctcttttctcagcggctgatcaaagatgttgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
                                   || | ||||  |   |||| ||| |||  |||   ||   |      || |||    || || |||||| ||| |||| |||||||| |||| |||||| || || |||||||| ||||| || ||||||||||| |||| 
gtaggtttctctaatttcatctgggctttgtgtgttaaattgtttaatacttttgtca-ttgatttggctttaagtttatttct-atctcgcat-ttctcagGTGGCTCTGAAATTTGAACATAGAAACAGTAAGGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTATACAA

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA20G38770.1 (Glycine max), 3'ss of exon 2
----------------------------------gtagactgttcgaagattttctcagttggattgctcttttctcagcggctgatcaaagatgttgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
                                   || | |||| ||   ||||  || |||  |||   ||   |      || |||    || || |||||| ||| |||| |||||||| || | |||||| || || |||||||| ||||| || ||||||||||| |||| 
gtaggttcctctaatttcatccaggctttgtgtgctaaattgtttgatacttttgaca-ttgatttggctttaagttgatttct-atctggcat-ttctcagGTGGCTCTGAAATTTGAACATAGGAACAGTAAGGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTATACAA

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: GLYMA06G09190.1 (Glycine max), 3'ss of exon 2
----------------------------------gtagactgttcgaagattttctca-gttggattgctcttttctcagcggctgatcaaagatgttgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
                                  ||  |    |  | |||||   ||  |||||||  || ||  | |     || || |   || |   |||| || || || ||||| || |||||||| || || ||||| ||||| ||||| ||||||||||| ||||||| 
gtatggtgttggttagtgtgttgatatttatttggttaaagagtgtatgatttatgcatattggatttgtcgttattgacgtattgctctat--tgattgtagGTAGCCTTAAAATTTGAGCATAGAAGCAGCAAGGGGTGCAATTATGGACCTCCATATGAGTGGCAGGTTTACAA

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: AT2G25760.2 (Arabidopsis thaliana), 3'ss of exon 2
gtagactgttcg-------aagatt-----ttctcagttggattgctcttttctcagcggctgatcaaagatgt------tgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
|||  ||||| |       ||| ||      | ||  |||| || || |  |||     |    |   |  |||      |   |||| |||||||||||||| || |||| ||| |||||||| ||||||||||| |||||||||||||||||||||| 
gtatgctgtttgtgtttgcaagtttacttgctttcttttggttttctgtgatctgtaatgtgattttgatgtgtccacttttgtagGTGGCTTTGAAGTTTGAGCATAGAACCAGCAAAGGATGTAACTATGGGCCACCGTATGAGTGGCAAGTTTACAA

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: AT3G13670.1 (Arabidopsis thaliana), 3'ss of exon 2
--------------------------------gtagactgtt----cgaagattttctcagttggattgctcttttctcagcggctga----tcaaagatgttgt-cagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
                                |  || |||       || ||  |   | | |  | | | |  |  ||| | || |    |  |   | || |  |||||||| | |||||||| || || ||||| || || ||||||||||| |||||  |||||||||| ||||||| 
gtaatataactcagtctgcgtttactgctgtggaggattgtcaccataaatatcattctattagcttagttatgcttacagtgtctcacatcttcactttcttatatagGTTGCTCTAAAGTTTGAGCATAGGAGCAGCAAGGGTTGCAACTATGGTCCTCCACATGAGTGGCAGGTTTACAA

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: Vv06s0004g01090.t01 (Vitis vinifera), 3'ss of exon 2
----------------------------------------gtagactgttcgaagattttctcagttggattgctcttttctcagcggc----tgatca--aagatgttgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
                                        |||  |   |      |  | | | |   | |  || | |     |  |    |  | |    | | || |||||| |||||||| || || ||||||| ||| ||||| ||||||||||| ||||| ||||||||||| || |||| 
gtaacctagtcccagctttcttactgactaataaaattgtgtatccgaattaggattagtgttattaaaagtaatcatattatgacttcattcttcttattgtgtttttatcagGTAGCTTTGAAATTCGAGCACAGAAACAGCAAAGGCTGCAACTATGGCCCTCCATATGAGTGGCAGGTGTACAA

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: Vv04s0008g00160.t01 (Vitis vinifera), 3'ss of exon 2
----------------------gta-gactgttcgaa--gattttctcagttggattgctcttttctcagcgg----ctgatcaaagatgttgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
                      |||  |    || |   | |  |||  | ||| ||     ||  | |   |    ||||||        | | ||||||| || || ||||| || |||||||| ||||| ||||| ||||| || || ||||||||||||||||||| 
gtgtaacatttatgactttgtggtacaatcactcaatgtggtgatctatgctgggttttatcttgttaatatgttttctgatcttcatgaattttagGTTGCCTTAAAATTTGAGCATAGAAGCAGCAAAGGGTGCAATTATGGACCACCATATGAGTGGCAAGTTTACAA

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: Vv08s0007g07420.t01 (Vitis vinifera), 3'ss of exon 3
----------------gtagactgttcgaagattttctcagttggattgctcttttctcagcggctgatcaaagatgt-----tgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
                 |  ||  |   ||  ||||| || |  ||||  ||  |||  |   |||  | ||||   |     |  ||||| || ||||||||||| ||| | |  || ||||||||||| ||||| ||||| |||||||||||||| |||| 
gtactattcaaatttttttaaccatatcaaagttttc-caat--gattagtcacttcagatatgctatttaaagggattcgcataacagGTAGCATTGAAGTTTGAGCACCGGAATAGCAAAGGATGCAATTATGGCCCTCCTTATGAGTGGCAAGTCTACAA

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: EDO97462 (Chlamydomonas reinhardtii), 3'ss of exon 2
gtagactgttcg-aagattttctcagttg-gattgctcttttctcagcggctgatcaaagat--gttgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
       ||  | |||||| | | |     | ||   ||  ||   |   || ||||    |  |    ||||| ||||| || ||||| ||| | ||||||||||| |||||||||||||| || || ||||||   || |||| 
-------gtcagcaagattgtttgaaccctggttttgctagtccacgaaactaatcagctctttgcgcgcagGTGGCTTTAAAATTTGAGCACCGCAGCAGTAAAGGCTGCAACTATGGGCCCCCCTACGAGTGGTCCGTGTACAA

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: PP1S66_174V6.1 (Physcomitrella patens), 3'ss of exon 2
----------------------------------------------------gtagactgtt-cgaagattttctcagttggattgctct-tttctcagcggctgatcaaag----------atgttgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
                                                    |  ||  |||  ||  ||||    |||    ||||| | | |||    |    | |  ||           || |  ||||| ||||| |||||||||||  | ||||| || || ||||| ||||| ||||| || |||||||||||||||| 
gtactctttactctaattcgttgaggtccggtcgtgtcgtattccgtatagtgccgagggttgtgattatttagcgagtatctttgctttgtgtctggaagtacaaactgagtcttgttttcgtgctcgcagGTAGCTTTAAAGTTTGAACATCGGAGCAGCAAGGGTTGCAATTATGGTCCTCCTTACGAGTGGCAAGTTTACAA

upper sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 2
lower sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 2
------------------------------------------------------------------gtagactgttcgaagattttctcagttggattgctcttttctcagcggctg-atcaaagatgtt-gt-cagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
                                                                  | | | ||     || | || | | ||  | ||   |    |  |       ||  ||   ||| || |||||||| |||||||| || ||  | || ||||| || ||||| ||||| ||||| ||||||||||| ||||||||
gtattcaatttcttacaatttgttctgctctacttctttcgcagcagcatgtttggaagatactctgcatattgcatcgaggtcttgtgatttttaatgtaataagttttgtattcatattgaactcgtttgtgcagGTTGCGTTGAAGTTCGAGCATCGGAGTAGTAAGGGCTGCAATTATGGTCCTCCTTATGAGTGGCAGGTTTACAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169096720|gb|FE496850.1|FE496850
EST:     GACGGAGGCTTAGTGGCGGCTCGGAACGTACAGGCCCTCAGGCTGTTGAG                         GTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCT
genomic: GACGGAGGCTTAGTGGCGGCTCGGAACGTACAGGCCCTCAGGCTGTTGAGgtagactgtt ... atgttgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCT
EST: gi|169104490|gb|FE503774.1|FE503774
EST:     GGCCCTCAGGCTGTTGAG                         GTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCT
genomic: GGCCCTCAGGCTGTTGAGgtagactgtt ... atgttgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 34

TAAGATCGAGAGGAAGCTTGGAAAAGGTGGCTTTGGTCAAGTATATGTAGGACGGAGGCTTAGTGGCGGCTCGGAACGTACAGGCCCTCAGGCTGTTGAGgtagactgtt ... atgttgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agattttctcagttggattgctcttttctcagcggctgatcaaagatgttgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC
                                 ggctgat  putative branch site (score: 34)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtagactgttcgaagattttctcagttggattgctcttttctcagcggctgatcaaagatgttgtcagGTTGCTTTGAAGTTTGAACACAGAAGCAGTAAAGGATGCAACTATGGGCCTCCGTATGAGTGGCAAGTTTACAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG