Sequence
atgc intronic sequence ATGC exonic sequenceTATGGAACAACAAACAGTCACGATAGCTAAGGCTGGCATACATGCGTCACTCAATGCCCGTTGCAGTGTCGTGGCTGCAGCAAATCCTATCTATGGAACTgtaagtcttgacgcaatgctgggtgactaatcaatcatggatgtttgttccag
Basic information
species | Selaginella moellendorffii |
transcript | EFJ29981 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ29981 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: LOC_Os05g39850.1 (Oryza sativa), 5'ss of exon 8
TATGGAACAACAAACAGTCACGATAGCTAAGGCTGGCATACATGCGTCACTCAATGCCCGTTGCAGTGTCGTGGCTGCAGCAAATCCTATCTATGGAACTgtaagtcttgacgcaatgctgggtgactaatca-atcatggatgtttgttccag----------------------------------
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TATGGAACAGCAAACTGTGACGATTGCAAAGGCAGGAATTCATGCGTCACTAAATGCGAGATGTAGTGTGATTGCTGCAGCAAATCCAATATATGGAACTgtaagttcttat-tatttctcgtccgctgcttttatggcgtgataatgttcttgcattttctgataataatttttggctgtgttacag
upper sequence: EFJ29981 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: GRMZM2G100639_T01 (Zea mays), 5'ss of exon 8
TATGGAACAACAAACAGTCACGATAGCTAAGGCTGGCATACATGCGTCACTCAATGCCCGTTGCAGTGTCGTGGCTGCAGCAAATCCTATCTATGGAACTgtaag---------tcttgacgcaat----gctgggtgactaatcaatcatggatgtttgttccag----------------------------
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TATGGAACAGCAAACTGTAACCATTGCAAAGGCAGGAATACATGCCTCACTAAATGCAAGATGTAGTGTAATTGCTGCAGCAAATCCAATATATGGAACTgtaagctgctaagctcttatcatgtctttcacttgctccatagtacctcttgattgtttgctatttctgacaacaattcctggctttatgacag
upper sequence: EFJ29981 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: GRMZM2G162445_T01 (Zea mays), 5'ss of exon 8
TATGGAACAACAAACAGTCACGATAGCTAAGGCTGGCATACATGCGTCACTCAATGCCCGTTGCAGTGTCGTGGCTGCAGCAAATCCTATCTATGGAACTgtaagtcttgacgcaatgctgg------gtgacta-atcaatcatggatgtttgttccag---------------------------
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TATGGAACAGCAAACTGTAACCATTGCAAAGGCAGGAATACATGCCTCGCTAAATGCGAGATGTAGTGTGATTGCTGCAGCAAATCCAATATATGGAACTgtaagctcttataatttatttcccttccataactgtgttcctcttgattgtttgctgtttctgacaatattttttggtttatgacag
upper sequence: EFJ29981 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: GLYMA08G08920.1 (Glycine max), 5'ss of exon 8
TATGGAACAACAAACAGTCACGATAGCTAAGGCTGGCATACATGCGTCACTCAATGCCCGTTGCAGTGTCGTGGCTGCAGCAAATCCTATCTATGGAACTgtaagtcttgacgcaa--------tgctg-ggtgactaatcaatcatggatgtttgttccag------------------------------------------------------
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TATGGAGCAGCAGACCGTGACTATTGCCAAAGCTGGTATCCATGCTTCACTGAATGCCCGATGCAGTGTGGTTGCAGCTGCAAATCCCATATATGGAACTgtaagtggcattgtgagagaaatttgctgtgaagtttaaactaccaaagttcctgatattgtactgaacctttatttatttttctaactagtggcttttattgtgcaattctacag
upper sequence: EFJ29981 (Selaginella moellendorffii), 5'ss of exon 8
lower sequence: GLYMA05G25980.1 (Glycine max), 5'ss of exon 8
TATGGAACAACAAACAGTCACGATAGCTAAGGCTGGCATACATGCGTCACTCAATGCCCGTTGCAGTGTCGTGGCTGCAGCAAATCCTATCTATGGAACTgtaagt--cttgacgcaa------tgctg-ggtgactaatcaatcatggatgtt--tgttccag-------------------------------------------------------
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TATGGAGCAGCAGACTGTGACTATTGCCAAAGCAGGTATCCATGCATCACTTAATGCCCGGTGCAGTGTGGTTGCAGCTGCAAATCCCATTTATGGAACTgtaagtggcattatgcgggaaatttgctgtgaagtttaaactaccaaagttcctgatgttgtaccgaacatttaattttttttcttctaaatagtggcttttattgtgcaattctacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|169105541|gb|FE506461.1|FE506461EST: TCAATGCCCGTTGCAGTGTCGTGGCTGCAGCAAATCCTATCTATGGAACT TATGATCGATCACTTACTCCTACAAAAAATATCGGGCTTCCGGACTCTCTA
genomic: TCAATGCCCGTTGCAGTGTCGTGGCTGCAGCAAATCCTATCTATGGAACTgtaagtcttg ... tttgttccagTATGATCGATCACTTACTCCTACAAAAAATATCGGGCTTCCGGACTCTCTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATGGAACAACAAACAGTCACGATAGCTAAGGCTGGCATACATGCGTCACTCAATGCCCGTTGCAGTGTCGTGGCTGCAGCAAATCCTATCTATGGAACTgtaagtcttgacgcaatgctgggtgactaatcaatcatggatgtttgttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG