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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttgacgcaatgctgggtgactaatcaatcatggatgtttgttccagTATGATCGATCACTTACTCCTACAAAAAATATCGGGCTTCCGGACTCTCTACTGTCACGATTTGACCTGTTGTTTATTGTTCTTGATCAAATGGATGCAG

Basic information

species Selaginella moellendorffii
transcript EFJ29981
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ29981 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: PP1S9_156V6.1 (Physcomitrella patens), 3'ss of exon 8
-------------------------------------------------------------------------------------gtaagtcttgacgca-atgctgggtgactaatcaat---catggatgtttgt----tccagTATGATCGATCACTTACTCCTACAAAAAATATCGGGCTTCCGGACTCTCTACTGTCACGATTTGACCTGTTGTTTATTGTTCTTGATCAAATGGATGCAG
                                                                                     ||| ||  || |  | ||| |   ||   |  ||||   || | | |||  |    | |||||||||||||| ||||| || || |||||||| || || || || ||  | |||||||||||||||||| | || || || || |||||||||||| |||
gtaagtgctaagtatctgcttcggagtcagatatttacatccaaattcacggatagcaaaatgtatgtggagggaaaatgtgaatgtatgttctggcatacatgatctctgtagatgcaattaacacgaaagttgatggtgtacagTATGATCGATCGCTTACACCGACCAAAAATATTGGACTGCCCGATTCATTGCTGTCACGATTTGACCTGCTTTTCATAGTGCTGGATCAAATGGATCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169105541|gb|FE506461.1|FE506461
EST:     TCAATGCCCGTTGCAGTGTCGTGGCTGCAGCAAATCCTATCTATGGAACT                         TATGATCGATCACTTACTCCTACAAAAAATATCGGGCTTCCGGACTCTCTA
genomic: TCAATGCCCGTTGCAGTGTCGTGGCTGCAGCAAATCCTATCTATGGAACTgtaagtcttg ... tttgttccagTATGATCGATCACTTACTCCTACAAAAAATATCGGGCTTCCGGACTCTCTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagtcttgacgcaatgctgggtgactaatcaatcatggatgtttgttccagTATGATCGATCACTTACTCCTACAAAAAATATCGGGCTTCCGGACTCTCTACTGTCACGATTTGACCTGTTGTTTATTGTTCTTGATCAAATGGATGCAG
                          gactaat  putative branch site (score: 2)
                                             tttgttcc  putative PPT
                             taatcaat  TA-rich tract