1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaggagttttcgcgtttgatcgatcttttctcgtcagtgcccctgactgacttgaattgctcgaaaaactttccagAACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACCGTTAAGTTCATCACGGATGTGGTTCTTTCCGACGAGCAGGGAGGTTACT
species | Selaginella moellendorffii |
transcript | EFJ29850 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAG AACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACCEST: gi|169020582|gb|FE428787.1|FE428787
genomic: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAGgtaggagttt ... aactttccagAACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACC
EST: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAG AACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACCEST: gi|169049488|gb|FE458321.1|FE458321
genomic: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAGgtaggagttt ... aactttccagAACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACC
EST: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAG AACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACCEST: gi|169056600|gb|FE465905.1|FE465905
genomic: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAGgtaggagttt ... aactttccagAACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACC
EST: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAG AACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACCEST: gi|169042602|gb|FE451031.1|FE451031
genomic: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAGgtaggagttt ... aactttccagAACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACC
EST: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAG AACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACCEST: gi|169046141|gb|FE455598.1|FE455598
genomic: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAGgtaggagttt ... aactttccagAACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACC
EST: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAG AACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACCEST: gi|169038223|gb|FE443922.1|FE443922
genomic: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAGgtaggagttt ... aactttccagAACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACC
EST: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAG AACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACCEST: gi|169069177|gb|FE478753.1|FE478753
genomic: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAGgtaggagttt ... aactttccagAACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACC
EST: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAG AACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACCEST: gi|169065848|gb|FE474906.1|FE474906
genomic: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAGgtaggagttt ... aactttccagAACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACC
EST: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAG AACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACCEST: gi|169108503|gb|FE510458.1|FE510458
genomic: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAGgtaggagttt ... aactttccagAACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACC
EST: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAG AACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACCEST: gi|169057222|gb|FE466761.1|FE466761
genomic: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAGgtaggagttt ... aactttccagAACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACC
EST: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAG AACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACCEST: gi|169070934|gb|FE480159.1|FE480159
genomic: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAGgtaggagttt ... aactttccagAACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACC
EST: GCCGGTAGCAACAAGAAGGCAACCGACAAG AACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACCEST: gi|169065847|gb|FE474905.1|FE474905
genomic: GCCGGTAGCAACAAGAAGGCAACCGACAAGgtaggagttt ... aactttccagAACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACC
EST: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAG AACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACCEST: gi|169070933|gb|FE480158.1|FE480158
genomic: ACAAAGTCTCGAGTTCTTCCGCCGGTAGCAACAAGAAGGCAACCGACAAGgtaggagttt ... aactttccagAACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACC
EST: GCCGGTAGCAACAAGAAGGCAACCGACAAG AACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACC
genomic: GCCGGTAGCAACAAGAAGGCAACCGACAAGgtaggagttt ... aactttccagAACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACC
gatcttttctcgtcagtgcccctgactgacttgaattgctcgaaaaactttccagAACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACCGTTAAGTTCATCACGGATGTGGTTCTTTCCGACGAGCAGGGAGGTTACT
gactgac putative branch site (score: 44)
ctttcc putative PPT
aaaaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggagttttcgcgtttgatcgatcttttctcgtcagtgcccctgactgacttgaattgctcgaaaaactttccagAACCGCCACCTCCAGCTGAATCTCATCAGCGAAAGCTACCACGGGGATACCGTTAAGTTCATCACGGATGTGGTTCTTTCCGACGAGCAGGGAGGTTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG