1 5' 3' | 2 5' 3' | 3 5' 3' |
ACGAGCTCACTTTCCTGGATTACGACGACGACAATGAAGGGAAGAGGAAGTCTCCTTGGCTTACGTCTCAGTACTTGAGCTTGAGGCTGCGATGTTCCTCgtaagttttctctctcggcaggctcttggattggagctcacaaacgagtgctctgtctag
species | Selaginella moellendorffii |
transcript | EFJ29850 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCTCCTTGGCTTACGTCTCAGTACTTGAGCTTGAGGCTGCGATGTTCCTC GTTGATGATGAAGGAAGCGAAGGATGCTCTCAGTCGCCACTTCAAGGGACGEST: gi|169020582|gb|FE428787.1|FE428787
genomic: TCTCCTTGGCTTACGTCTCAGTACTTGAGCTTGAGGCTGCGATGTTCCTCgtaagttttc ... ctctgtctagGTTGATGATGAAGGAAGCGAAGGATGCTCTCAGTCGCCACTTCAAGGGACG
EST: TCTCCTTGGCTTACGTCTCAGTACTTGAGCTTGAGGCTGCGATGTTCCTC GTTGATGATGAAGGAAGCGAAGGATGCTCTCAGTCGCCACTTCAAGGGACGEST: gi|169049488|gb|FE458321.1|FE458321
genomic: TCTCCTTGGCTTACGTCTCAGTACTTGAGCTTGAGGCTGCGATGTTCCTCgtaagttttc ... ctctgtctagGTTGATGATGAAGGAAGCGAAGGATGCTCTCAGTCGCCACTTCAAGGGACG
EST: TCTCCTTGGCTTACGTCTCAGTACTTGAGCTTGAGGCTGCGATGTTCCTC GTTGATGATGAAGGAAGCGAAGGATGCTCTCAGTCGCCACTTCAAGGGACGEST: gi|169056600|gb|FE465905.1|FE465905
genomic: TCTCCTTGGCTTACGTCTCAGTACTTGAGCTTGAGGCTGCGATGTTCCTCgtaagttttc ... ctctgtctagGTTGATGATGAAGGAAGCGAAGGATGCTCTCAGTCGCCACTTCAAGGGACG
EST: TCTCCTTGGCTTACGTCTCAGTACTTGAGCTTGAGGCTGCGATGTTCCTC GTTGATGATGAAGGAAGCGAAGGATGCTCTCAGTCGCCACTTCAAGGGACGEST: gi|169046141|gb|FE455598.1|FE455598
genomic: TCTCCTTGGCTTACGTCTCAGTACTTGAGCTTGAGGCTGCGATGTTCCTCgtaagttttc ... ctctgtctagGTTGATGATGAAGGAAGCGAAGGATGCTCTCAGTCGCCACTTCAAGGGACG
EST: CTCCTTGGCTTACGTCTCAGTACTTGAGC-TGAGGGCTGCGATGTTCCTC GTTGATGATGAAGGAAGCGAAGGATGCTCTCAGTCGCCACTTCAAGGGACGEST: gi|169038223|gb|FE443922.1|FE443922
genomic: CTCCTTGGCTTACGTCTCAGTACTTGAGCTTGA-GGCTGCGATGTTCCTCgtaagttttc ... ctctgtctagGTTGATGATGAAGGAAGCGAAGGATGCTCTCAGTCGCCACTTCAAGGGACG
EST: TGGCTTACGTCTCAGTACTTGAGCTTGAGGCTGCGATGTTCCTC GTTGATGATGAAGGAAGCGAAGGATGCTCTCAGTCGCCACTTCAAGGGACGEST: gi|169069177|gb|FE478753.1|FE478753
genomic: TGGCTTACGTCTCAGTACTTGAGCTTGAGGCTGCGATGTTCCTCgtaagttttc ... ctctgtctagGTTGATGATGAAGGAAGCGAAGGATGCTCTCAGTCGCCACTTCAAGGGACG
EST: TCTCCTTGGCTTACGTCTCAGTACTTGAGCTTGAGGCTGCGATGTTCCTC GTTGATGATGAAGGAAGCGAAGGATGCTCTCAGTCGCCACTTCAAGGGACGEST: gi|169065848|gb|FE474906.1|FE474906
genomic: TCTCCTTGGCTTACGTCTCAGTACTTGAGCTTGAGGCTGCGATGTTCCTCgtaagttttc ... ctctgtctagGTTGATGATGAAGGAAGCGAAGGATGCTCTCAGTCGCCACTTCAAGGGACG
EST: TCTCCTTGGCTTACGTCTCAGTACTTGAGCTTGAGGCTGCGATGTTCCTC GTTGATGATGAAGGAAGCGAAGGATGCTCTCAGTCGCCACTTCAAGGGACGEST: gi|169108503|gb|FE510458.1|FE510458
genomic: TCTCCTTGGCTTACGTCTCAGTACTTGAGCTTGAGGCTGCGATGTTCCTCgtaagttttc ... ctctgtctagGTTGATGATGAAGGAAGCGAAGGATGCTCTCAGTCGCCACTTCAAGGGACG
EST: TCTCCTTGGCTTACGTCTCAGTACTTGAGCTTGAGGCTGCGATGTTCCTC GTTGATGATGAAGGAAGCGAAGGATGCTCTCAGTCGCCACTTCAAGGGACGEST: gi|169057222|gb|FE466761.1|FE466761
genomic: TCTCCTTGGCTTACGTCTCAGTACTTGAGCTTGAGGCTGCGATGTTCCTCgtaagttttc ... ctctgtctagGTTGATGATGAAGGAAGCGAAGGATGCTCTCAGTCGCCACTTCAAGGGACG
EST: TCTCCTTGGCTTACGTCTCAGTACTTGAGCTTGAGGCTGCGATGTTCCTC GTTGATGATGAAGGAAGCGAAGGATGCTCTCAGTCGCCACTTCAAGGGACGEST: gi|169065847|gb|FE474905.1|FE474905
genomic: TCTCCTTGGCTTACGTCTCAGTACTTGAGCTTGAGGCTGCGATGTTCCTCgtaagttttc ... ctctgtctagGTTGATGATGAAGGAAGCGAAGGATGCTCTCAGTCGCCACTTCAAGGGACG
EST: TCTCCTTGGCTTACGTCTCAGTACTTGAGCTTGAGGCTGCGATGTTCCTC GTTGATGATGAAGGAAGCGAAGGATGCTCTCAGTCGCCACTTCAAGGGACG
genomic: TCTCCTTGGCTTACGTCTCAGTACTTGAGCTTGAGGCTGCGATGTTCCTCgtaagttttc ... ctctgtctagGTTGATGATGAAGGAAGCGAAGGATGCTCTCAGTCGCCACTTCAAGGGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGAGCTCACTTTCCTGGATTACGACGACGACAATGAAGGGAAGAGGAAGTCTCCTTGGCTTACGTCTCAGTACTTGAGCTTGAGGCTGCGATGTTCCTCgtaagttttctctctcggcaggctcttggattggagctcacaaacgagtgctctgtctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT