1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtcagctttcatttcgctttccgtttgacgtttcagcatcgctgttgcacgaacacgtgtaggtagcatccaactctctgactcttgttgtgctgtagGGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTATTTTATCATCAGGCCCGGGGGATTACTCAACAAAGAAGGCGGTCAATACA
species | Selaginella moellendorffii |
transcript | EFJ23867 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCTCATTCTCAATGCGGTTAAAGGTCGAGTTTTGGTGTGGAAGCTTAAG GGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTATEST: gi|70670011|gb|DN838588.1|DN838588
genomic: CTCTCATTCTCAATGCGGTTAAAGGTCGAGTTTTGGTGTGGAAGCTTAAGgtcagctttc ... tgtgctgtagGGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTAT
EST: CTCTCATTCTCAATGCGGTTAAAGGTCGAGTTTTGGTGTGGAAGCTTAAG GGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTATEST: gi|169026943|gb|FE434268.1|FE434268
genomic: CTCTCATTCTCAATGCGGTTAAAGGTCGAGTTTTGGTGTGGAAGCTTAAGgtcagctttc ... tgtgctgtagGGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTAT
EST: CTCTCATTCTCAATGCGGTTAAAGGTCGAGTTTTGGTGTGGAAGCTTAAG GGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTATEST: gi|169075027|gb|FE482245.1|FE482245
genomic: CTCTCATTCTCAATGCGGTTAAAGGTCGAGTTTTGGTGTGGAAGCTTAAGgtcagctttc ... tgtgctgtagGGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTAT
EST: CTCTCATTCTCAATGCGGTTAAAGGTCGAGTTTTGGTGTGGAAGCTTAAG GGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTATEST: gi|169033431|gb|FE442304.1|FE442304
genomic: CTCTCATTCTCAATGCGGTTAAAGGTCGAGTTTTGGTGTGGAAGCTTAAGgtcagctttc ... tgtgctgtagGGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTAT
EST: CTCTCATTCTCAATGCGGTTAAAGGTCGAGTTTTGGTGTGGAAGCTTAAG GGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTATEST: gi|169099245|gb|FE502070.1|FE502070
genomic: CTCTCATTCTCAATGCGGTTAAAGGTCGAGTTTTGGTGTGGAAGCTTAAGgtcagctttc ... tgtgctgtagGGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTAT
EST: CTCTCATTCTCAATGCGGTTAAAGGTCGAGTTTTGGTGTGGAAGCTTAAG GGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTATEST: gi|169107432|gb|FE504180.1|FE504180
genomic: CTCTCATTCTCAATGCGGTTAAAGGTCGAGTTTTGGTGTGGAAGCTTAAGgtcagctttc ... tgtgctgtagGGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTAT
EST: CTCTCATTCTCAATGCGGTTAAAGGTCGAGTTTTGGTGTGGAAGCTTAAG GGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTATEST: gi|169099246|gb|FE502071.1|FE502071
genomic: CTCTCATTCTCAATGCGGTTAAAGGTCGAGTTTTGGTGTGGAAGCTTAAGgtcagctttc ... tgtgctgtagGGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTAT
EST: CTCTCATTCTCAATGCGGTTAAAGGTCGAGTTTTGGTGTGGAAGCTTAAG GGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTATEST: gi|169041186|gb|FE450421.1|FE450421
genomic: CTCTCATTCTCAATGCGGTTAAAGGTCGAGTTTTGGTGTGGAAGCTTAAGgtcagctttc ... tgtgctgtagGGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTAT
EST: CTCTCATTCTCAATGCGGTTAAAGGTCGAGTTTTGGTGTGGAAGCTTAAG GGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTATEST: gi|169033432|gb|FE442305.1|FE442305
genomic: CTCTCATTCTCAATGCGGTTAAAGGTCGAGTTTTGGTGTGGAAGCTTAAGgtcagctttc ... tgtgctgtagGGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTAT
EST: CTCTCATTCTCAATGCGGTTAAAGGTCGAGTTTTGGTGTGGAAGCTTAAG GGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTAT
genomic: CTCTCATTCTCAATGCGGTTAAAGGTCGAGTTTTGGTGTGGAAGCTTAAGgtcagctttc ... tgtgctgtagGGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTAT
gttgcacgaacacgtgtaggtagcatccaactctctgactcttgttgtgctgtagGGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTATTTTATCATCAGGCCCGGGGGATTACTCAACAAAGAAGGCGGTCAATACA
ctctgac putative branch site (score: 74)
ctcttgtt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagctttcatttcgctttccgtttgacgtttcagcatcgctgttgcacgaacacgtgtaggtagcatccaactctctgactcttgttgtgctgtagGGCGAGGCAGCTGTCAAGGAAGCCTACTCCCAGCACGAGGAGCTCGGGTATTTTATCATCAGGCCCGGGGGATTACTCAACAAAGAAGGCGGTCAATACA
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