1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGCTGGATGGAAGCTCCCTGGCTCTGTCATGGAGGACACACCAAAGTTCGTCGACTATCTGGGAGTTAAACACCTTGCCGAGGCCGCTGCTTCTGCAAAGgtaagagcatcaaagcgctagctatctagctcgagattttttaactcttctttttctttcacattttccag
species | Selaginella moellendorffii |
transcript | EFJ23867 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCGACTATCTGGGAGTTAAACACCTTGCTGAGGCCGCTGCTTCTGCAAAG GTTCCAAAGTTCGTACTCGTCTCGTCAATGGGAGTGACAAGGCCTTACTCAEST: gi|70670011|gb|DN838588.1|DN838588
genomic: TCGACTATCTGGGAGTTAAACACCTTGCCGAGGCCGCTGCTTCTGCAAAGgtaagagcat ... cattttccagGTTCCAAAGTTCGTACTCGTCTCGTCAATGGGAGTGACAAGGCCTTACTCA
EST: TCGACTATCTGGGAGTTAAACACCTTGCCGAGGCCGCTGCTTCTGCAAAG GTTCCAAAGTTCGTACTCGTCTCGTCAATGGGAGTGACAAGGCCTTACTCAEST: gi|169026943|gb|FE434268.1|FE434268
genomic: TCGACTATCTGGGAGTTAAACACCTTGCCGAGGCCGCTGCTTCTGCAAAGgtaagagcat ... cattttccagGTTCCAAAGTTCGTACTCGTCTCGTCAATGGGAGTGACAAGGCCTTACTCA
EST: TCGACTATCTGGGAGTTAAACACCTTGCTGAGGCCGCTGCTTCTGCAAAG GTTCCAAAGTTCGTACTCGTCTCGTCAATGGGAGTGACAAGGCCTTACTCAEST: gi|169075027|gb|FE482245.1|FE482245
genomic: TCGACTATCTGGGAGTTAAACACCTTGCCGAGGCCGCTGCTTCTGCAAAGgtaagagcat ... cattttccagGTTCCAAAGTTCGTACTCGTCTCGTCAATGGGAGTGACAAGGCCTTACTCA
EST: TCGACTATCTGGGAGTTAAACACCTTGCTGAGGCCGCTGCTTCTGCAAAG GTTCCAAAGTTCGTACTCGTCTCGTCAATGGGAGTGACAAGGCCTTACTCAEST: gi|169033431|gb|FE442304.1|FE442304
genomic: TCGACTATCTGGGAGTTAAACACCTTGCCGAGGCCGCTGCTTCTGCAAAGgtaagagcat ... cattttccagGTTCCAAAGTTCGTACTCGTCTCGTCAATGGGAGTGACAAGGCCTTACTCA
EST: TCGACTATCTGGGAGTTAAACACCTTGCCGAGGCCGCTGCTTCTGCAAAG GTTCCAAAGTTCGTACTCGTCTCGTCAATGGGAGTGACAAGGCCTTACTCAEST: gi|169099245|gb|FE502070.1|FE502070
genomic: TCGACTATCTGGGAGTTAAACACCTTGCCGAGGCCGCTGCTTCTGCAAAGgtaagagcat ... cattttccagGTTCCAAAGTTCGTACTCGTCTCGTCAATGGGAGTGACAAGGCCTTACTCA
EST: TCGACTATCTGGGAGTTAAACACCTTGCTGAGGCCGCTGCTTCTGCAAAG GTTCCAAAGTTCGTACTCGTCTCGTCAATGGGAGTGACAAGGCCTTACTCAEST: gi|169107432|gb|FE504180.1|FE504180
genomic: TCGACTATCTGGGAGTTAAACACCTTGCCGAGGCCGCTGCTTCTGCAAAGgtaagagcat ... cattttccagGTTCCAAAGTTCGTACTCGTCTCGTCAATGGGAGTGACAAGGCCTTACTCA
EST: TCGACTATCTGGGAGTTAAACACCTTGCCGAGGCCGCTGCTTCTGCAAAG GTTCCAAAGTTCGTACTCGTCTCGTCAATGGGAGTGACAAGGCCTTACTCAEST: gi|169099246|gb|FE502071.1|FE502071
genomic: TCGACTATCTGGGAGTTAAACACCTTGCCGAGGCCGCTGCTTCTGCAAAGgtaagagcat ... cattttccagGTTCCAAAGTTCGTACTCGTCTCGTCAATGGGAGTGACAAGGCCTTACTCA
EST: TCGACTATCTGGGAGTTAAACACCTTGCTGAGGCCGCTGCTTCTGCAAAG GTTCCAAAGTTCGTACTCGTCTCGTCAATGGGAGTGACAAGGCCTTACTCAEST: gi|169041186|gb|FE450421.1|FE450421
genomic: TCGACTATCTGGGAGTTAAACACCTTGCCGAGGCCGCTGCTTCTGCAAAGgtaagagcat ... cattttccagGTTCCAAAGTTCGTACTCGTCTCGTCAATGGGAGTGACAAGGCCTTACTCA
EST: TCGACTATCTGGGAGTTAAACACCTTGCTGAGGCCGCTGCTTCTGCAAAG GTTCCAAAGTTCGTACTCGTCTCGTCAATGGGAGTGACAAGGCCTTACTCAEST: gi|169033432|gb|FE442305.1|FE442305
genomic: TCGACTATCTGGGAGTTAAACACCTTGCCGAGGCCGCTGCTTCTGCAAAGgtaagagcat ... cattttccagGTTCCAAAGTTCGTACTCGTCTCGTCAATGGGAGTGACAAGGCCTTACTCA
EST: TCGACTATCTGGGAGTTAAACACCTTGCCGAGGCCGCTGCTTCTGCAAAG GTTCCAAAGTTCGTACTCGTCTCGTCAATGGGAGTGACAAGGCCTTACTCA
genomic: TCGACTATCTGGGAGTTAAACACCTTGCCGAGGCCGCTGCTTCTGCAAAGgtaagagcat ... cattttccagGTTCCAAAGTTCGTACTCGTCTCGTCAATGGGAGTGACAAGGCCTTACTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGGATGGAAGCTCCCTGGCTCTGTCATGGAGGACACACCAAAGTTCGTCGACTATCTGGGAGTTAAACACCTTGCCGAGGCCGCTGCTTCTGCAAAGgtaagagcatcaaagcgctagctatctagctcgagattttttaactcttctttttctttcacattttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG