1 5' 3' | 2 5' 3' | 3 5' 3' |
AAGGAGGATGAGATGCAACGCATCGAGGACGCCGGCGGTCGAGTCATCTTCTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttgccatctttcgctttgctttgctataagttccatcgtttgcttgttcttcgcattagttccatctttgttcttccatctttcgcttgttcttcgcatgcttgcttgtggattgttttcggagtgagtgacagtcgcatttatttttccag
species | Selaginella moellendorffii |
transcript | EFJ23827 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATCG GCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCGEST: gi|169050296|gb|FE457531.1|FE457531
genomic: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCG
EST: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATCG GCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCGEST: gi|169076892|gb|FE485285.1|FE485285
genomic: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCG
EST: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTG GCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCGEST: gi|169057915|gb|FE465513.1|FE465513
genomic: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCG
EST: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTG GCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAANTGCGEST: gi|169097547|gb|FE497989.1|FE497989
genomic: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCG
EST: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATCG GCGATCGCTACCTCGACCGCTTCGTCATCCEST: gi|169095995|gb|FE499999.1|FE499999
genomic: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCC
EST: GAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATCG GCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCGEST: gi|169043479|gb|FE450753.1|FE450753
genomic: GAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCG
EST: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTG GCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCGEST: gi|169057914|gb|FE465512.1|FE465512
genomic: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCG
EST: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTG GCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCGEST: gi|169095397|gb|FE497503.1|FE497503
genomic: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCG
EST: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTG GCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCGEST: gi|169038977|gb|FE449694.1|FE449694
genomic: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCG
EST: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTG GCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCGEST: gi|169042207|gb|FE454250.1|FE454250
genomic: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCG
EST: CGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTG GCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCGEST: gi|169093362|gb|FE493212.1|FE493212
genomic: CGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCG
EST: TGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATCG GCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCGEST: gi|169021765|gb|FE430412.1|FE430412
genomic: TGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCG
EST: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTG GCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCGEST: gi|169075809|gb|FE483313.1|FE483313
genomic: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCG
EST: CTGGAACGGCTACCGAGTCATGNGAATGCTGGCCATGTCCAGAGCGATCG GCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTNCA-GTGCEST: gi|169043478|gb|FE450752.1|FE450752
genomic: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGT-CAAGTGC
EST: GGGAATGCTGGCCATGTCCAGAGCGATTG GCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCGEST: gi|169042208|gb|FE454251.1|FE454251
genomic: GGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCG
EST: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTG GCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCGEST: gi|169029818|gb|FE438386.1|FE438386
genomic: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCG
EST: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATCG GCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCGEST: gi|169099514|gb|FE502599.1|FE502599
genomic: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCG
EST: GCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATCG GCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCGEST: gi|169095398|gb|FE497504.1|FE497504
genomic: GCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCG
EST: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTG GCGATCGCTACCTCGACCGCTTCGTCATCNCAAACCCGGACGTCAAGTGCGEST: gi|169108344|gb|FE510416.1|FE510416
genomic: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCG
EST: GGAATGCTGGCCATGTCCAGAGCGATTG GCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCGEST: gi|169029819|gb|FE438387.1|FE438387
genomic: GGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCG
EST: CTGGAACGGCTACCGAGTCATGNGAATGCTGGCCATGTCCAGAGCGATCG GCGATCGCTACCTCGACCGCTTCGTCAEST: gi|169026883|gb|FE434234.1|FE434234
genomic: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCA
EST: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTG GCGATCGCTACCTCGACCGCTTCGTCATCCCEST: gi|169026882|gb|FE434233.1|FE434233
genomic: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCCC
EST: GGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTG GCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCGEST: gi|169114943|gb|FE515892.1|FE515892
genomic: GGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCG
EST: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATCG GCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCG
genomic: CTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttg ... atttttccagGCGATCGCTACCTCGACCGCTTCGTCATCCCAAACCCGGACGTCAAGTGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGAGGATGAGATGCAACGCATCGAGGACGCCGGCGGTCGAGTCATCTTCTGGAACGGCTACCGAGTCATGGGAATGCTGGCCATGTCCAGAGCGATTGgtgagctttgccatctttcgctttgctttgctataagttccatcgtttgcttgttcttcgcattagttccatctttgttcttccatctttcgcttgttcttcgcatgcttgcttgtggattgttttcggagtgagtgacagtcgcatttatttttccag
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