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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGTCACTTCCCTGTGACATTGCCCGTCACTCCAGCCAAGATGGTCACCATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAGgtagtggcactcttcttcattgtttgttcttgatcgtctttccag

Basic information

species Selaginella moellendorffii
transcript EFJ23827
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169038978|gb|FE449695.1|FE449695
EST:     ATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAG                         GTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATC
genomic: ATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAGgtagtggcac ... gtctttccagGTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATC
EST: gi|169097547|gb|FE497989.1|FE497989
EST:     ATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAG                         GTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATC
genomic: ATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAGgtagtggcac ... gtctttccagGTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATC
EST: gi|169024131|gb|FE432496.1|FE432496
EST:     ATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAG                         GTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATC
genomic: ATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAGgtagtggcac ... gtctttccagGTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATC
EST: gi|169021766|gb|FE430413.1|FE430413
EST:     ATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAG                         GTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATC
genomic: ATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAGgtagtggcac ... gtctttccagGTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATC
EST: gi|169075809|gb|FE483313.1|FE483313
EST:     ATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAG                         GTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATC
genomic: ATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAGgtagtggcac ... gtctttccagGTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATC
EST: gi|169076893|gb|FE485286.1|FE485286
EST:     ATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAG                         GTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATC
genomic: ATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAGgtagtggcac ... gtctttccagGTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATC
EST: gi|169042208|gb|FE454251.1|FE454251
EST:     ATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAG                         GTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATC
genomic: ATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAGgtagtggcac ... gtctttccagGTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATC
EST: gi|169095398|gb|FE497504.1|FE497504
EST:     ATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAG                         GTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATC
genomic: ATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAGgtagtggcac ... gtctttccagGTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATC
EST: gi|169029819|gb|FE438387.1|FE438387
EST:     ATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAG                         GTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATC
genomic: ATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAGgtagtggcac ... gtctttccagGTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATC
EST: gi|169026883|gb|FE434234.1|FE434234
EST:     ATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAG                         GTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATC
genomic: ATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAGgtagtggcac ... gtctttccagGTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATC
EST: gi|169114943|gb|FE515892.1|FE515892
EST:     ATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAG                         GTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATC
genomic: ATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAGgtagtggcac ... gtctttccagGTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 52

CCTGTCACTTCCCTGTGACATTGCCCGTCACTCCAGCCAAGATGGTCACCATAGCTCGCACCACTTCTTCGGTGTTTACGATGGGCATGGCGGATCCCAGgtagtggcac ... gtctttccagGTAGCACACTTTTGCAAGGATCGTCTCCACGTCGCTCTAGTGGAACAGATCAAAGAGTCGATAGCTCTGGCCGGGTTTGCCAGTGCAAACGAGGTGACGT




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