Sequence
atgc intronic sequence ATGC exonic sequenceATTACTGTAGGATCAGAAGATTTATCTGCCAATCATGACGTCACGCAGATAGTTGAGgttagttttgttggctggctttagattgatgctcacaaagactgtttgtag
Basic information
species | Selaginella moellendorffii |
transcript | EFJ23753 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ23753 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: GLYMA01G01390.1 (Glycine max), 5'ss of exon 7
ATTACTGTAGGATCAGAAGATTTATCTGCCAATCATGACGTCACGCAGATAGTTGAGgtt--agttttgttgg--ctggcttt---agattgatgctcacaaagac---tgtttgtag----------------------------
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GTTGTTGTAGGCTCAGAAGACTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAGgtgtgaattttatcaaatctacatttctcatatatgcatttatatgtatttatgcttttagtgaatattaattccttttacattcatag
upper sequence: EFJ23753 (Selaginella moellendorffii), 5'ss of exon 7
lower sequence: GLYMA09G34390.1 (Glycine max), 5'ss of exon 7
ATTACTGTAGGATCAGAAGATTTATCTGCCAATCATGACGTCACGCAGATAGTTGAGgt--tagttttgttggctg-gctttagattgatgctcacaaagactgtttgtag-------------------------
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GTTGTTGTAGGCTCAGAAGACTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAGgtgtgaattttatcaaatctacatttctcatatatgtatttatgcttttagtgaatattaattccttttacattcatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|169053217|gb|FE462492.1|FE462492EST: TAGGATCAGAAGATTTATCTGCTAATCATGACGTCACGCAGATAGTTGAG GTGCTTGACGATAAGTCTCGGGACAGACGCTTACAGGAATTGCTTCGGCTA
genomic: TAGGATCAGAAGATTTATCTGCCAATCATGACGTCACGCAGATAGTTGAGgttagttttg ... ctgtttgtagGTGCTTGACGATAAGTCTCGGGACAGACGCTTACAGGAATTGCTTCGGTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTACTGTAGGATCAGAAGATTTATCTGCCAATCATGACGTCACGCAGATAGTTGAGgttagttttgttggctggctttagattgatgctcacaaagactgtttgtag
- - - - - - - - - - - - - - - - - - - - - - GCAGAT