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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggaggttttaatcttttcaagctatcacttactttttatctttcagAAAGACAAACCATAATGTTAAGTGCAACCTGGCCAACTTCTGTACAAAAGCTTGCCCAGGAATTCATTCAGGACGCAAGTCCTGTGAAG

Basic information

species Selaginella moellendorffii
transcript EFJ23753
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169053217|gb|FE462492.1|FE462492
EST:     CTT-GCTTTGAGCCTGCTGTTCGAGCAATTGTTAGTCATATA-CCCAGGG                         AAAGACAAACCATAATGTTTAGTGCAACCTGGCCAACTTCTGTACAAAAG
genomic: CTTGGCTTTGAGCCTGCTGTTCGAGCAATTGTTAGTCATATACCCCA-GGgtacggaggt ... tatctttcagAAAGACAAACCATAATGTTAAGTGCAACCTGGCCAACTTCTGTACAAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacggaggttttaatcttttcaagctatcacttactttttatctttcagAAAGACAAACCATAATGTTAAGTGCAACCTGGCCAACTTCTGTACAAAAGCTTGCCCAGGAATTCATTCAGGACGCAAGTCCTGTGAAG
                                  cacttac  putative branch site (score: 2)
                                    cttactttttatcttt  CT-rich tract
              ttttaatcttttcaa  TA-rich tract