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gtaagagtcgggctgcctcatgaagaaaaattcttgaccatgatttgtcgccggtgcagATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTGGAGCATTCACTCATTGGCGTCCGTTCCAGGCTAGAGTCTGGTGTAGAGC
species | Selaginella moellendorffii |
transcript | EFJ23417 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTTTCACATCTCCGCGGTTTTTGCCTCCAACAAAGATGGAGAAATGCAGG ATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTGEST: gi|169034358|gb|FE443131.1|FE443131
genomic: TTTTCACATCTCCGCGGTTTTTGCCTCCAACAAAGATGGAGAAATGCAGGgtaagagtcg ... gccggtgcagATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTG
EST: TTTTCACATCTCCGCGGTTTTTGCCTCCAACAAAGATGGAGAAATGCAGG ATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTGEST: gi|169065579|gb|FE474832.1|FE474832
genomic: TTTTCACATCTCCGCGGTTTTTGCCTCCAACAAAGATGGAGAAATGCAGGgtaagagtcg ... gccggtgcagATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTG
EST: TTTTCACATCTCCGCGGTTTTTGCCTCCAACAAAGATGGAGAAATGCAGG ATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTGEST: gi|169074270|gb|FE481930.1|FE481930
genomic: TTTTCACATCTCCGCGGTTTTTGCCTCCAACAAAGATGGAGAAATGCAGGgtaagagtcg ... gccggtgcagATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTG
EST: TTTTCACATCTCCGCGGTTTTTGCCTCCAACAAAGATGGAGAAATGCAGG ATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTGEST: gi|169040800|gb|FE447851.1|FE447851
genomic: TTTTCACATCTCCGCGGTTTTTGCCTCCAACAAAGATGGAGAAATGCAGGgtaagagtcg ... gccggtgcagATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTG
EST: TTTTCACATCTCCGCGGTTTTTGCCTCCAACAAAGATGGAGAAATGCAGG ATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTG
genomic: TTTTCACATCTCCGCGGTTTTTGCCTCCAACAAAGATGGAGAAATGCAGGgtaagagtcg ... gccggtgcagATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTG
gagtcgggctgcctcatgaagaaaaattcttgaccatgatttgtcgccggtgcagATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTGGAGCATTCACTCATTGGCGTCCGTTCCAGGCTAGAGTCTGGTGTAGAGC
tcttgac putative branch site (score: 20)
aagaaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagtcgggctgcctcatgaagaaaaattcttgaccatgatttgtcgccggtgcagATTATAGATTCTATCGTATCGCACGGCTGCTTTCTAAAGTCCTGCAGTGTGGAGCATTCACTCATTGGCGTCCGTTCCAGGCTAGAGTCTGGTGTAGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA