1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
ATGGCGGTATCCTACCTCTAATGACTTTGGCTCGGAGATCATTCCCGCTGCAGCGAGCGAGTACAATGTTCAGgtgggaagtttgtgtgctttgtcttgcattctacgcctaaaacttgatattgcag
species | Selaginella moellendorffii |
transcript | EFJ23417 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ACTTTGGCTCGGAGATCATTCCCGCTGCAGCGAGCGAGTACAATGTTCAG GCGTATCTCTTCAATGACTACTGGGAAGACATTGGAACTATTAAGTCGTTTEST: gi|169034358|gb|FE443131.1|FE443131
genomic: ACTTTGGCTCGGAGATCATTCCCGCTGCAGCGAGCGAGTACAATGTTCAGgtgggaagtt ... gatattgcagGCGTATCTCTTCAATGACTACTGGGAAGACATTGGAACTATTAAGTCGTTT
EST: ACTTTGGCTCGGAGATCATTCCCGCTGCAGCGAGCGAGTACAATGTTCAG GCGTATCTCTTCAATGACTACTGGGAAGACATTGGAACTATTAAGTCGTTTEST: gi|169065579|gb|FE474832.1|FE474832
genomic: ACTTTGGCTCGGAGATCATTCCCGCTGCAGCGAGCGAGTACAATGTTCAGgtgggaagtt ... gatattgcagGCGTATCTCTTCAATGACTACTGGGAAGACATTGGAACTATTAAGTCGTTT
EST: ACTTTGGCTCGGAGATCATTCCCGCTGCAGCGAGCGAGTACAATGTTCAG GCGTATCTCTTCAATGACTACTGGGAAGACATTGGAACTATTAAGTCGTTTEST: gi|169034359|gb|FE443132.1|FE443132
genomic: ACTTTGGCTCGGAGATCATTCCCGCTGCAGCGAGCGAGTACAATGTTCAGgtgggaagtt ... gatattgcagGCGTATCTCTTCAATGACTACTGGGAAGACATTGGAACTATTAAGTCGTTT
EST: ACTTTGGCTCGGAGATCATTCCCGCTGCAGCGAGCGAGTACAATGTTCAG GCGTATCTCTTCAATGACTACTGGGAAGACATTGGAACTATTAAGTCGTTTEST: gi|169074270|gb|FE481930.1|FE481930
genomic: ACTTTGGCTCGGAGATCATTCCCGCTGCAGCGAGCGAGTACAATGTTCAGgtgggaagtt ... gatattgcagGCGTATCTCTTCAATGACTACTGGGAAGACATTGGAACTATTAAGTCGTTT
EST: ACTTTGGCTCGGAGATCATTCCCGCTGCAGCGAGCGAGTACAATGTTCAG GCGTATCTCTTCAATGACTACTGGGAAGACATTGGAACTATTAAGTCGTTTEST: gi|169040800|gb|FE447851.1|FE447851
genomic: ACTTTGGCTCGGAGATCATTCCCGCTGCAGCGAGCGAGTACAATGTTCAGgtgggaagtt ... gatattgcagGCGTATCTCTTCAATGACTACTGGGAAGACATTGGAACTATTAAGTCGTTT
EST: ACTTTGGCTCGGAGATCATTCCCGCTGCAGCGAGCGAGTACAATGTTCAG GCGTATCTCTTCAATGACTACTGGGAAGACATTGGAACTATTAAGTCGTTT
genomic: ACTTTGGCTCGGAGATCATTCCCGCTGCAGCGAGCGAGTACAATGTTCAGgtgggaagtt ... gatattgcagGCGTATCTCTTCAATGACTACTGGGAAGACATTGGAACTATTAAGTCGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGCGGTATCCTACCTCTAATGACTTTGGCTCGGAGATCATTCCCGCTGCAGCGAGCGAGTACAATGTTCAGgtgggaagtttgtgtgctttgtcttgcattctacgcctaaaacttgatattgcag
- - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - CTGCAG