1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgggtcttcgatctttctcctttctctgtttttactaacagctactaccagAACGAAGGCGGTGTAAAGTCGTCCAAGGCACCCCCCAAGGAGGAGGACGAAGCCTTTGACGACGAAGACGAAGAGCACGGTGACACACAGTGTGGAACTT
species | Selaginella moellendorffii |
transcript | EFJ23237 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATCCAGCGTGAACAACAGCGGAAGCAAGAGCAAGACCTCTGTTGTCAAG AACGAAGGCGGTGTAAAGTCGTCCAAGGCACCCCCGAAGGAGGAGGACGAAEST: gi|169049975|gb|FE458067.1|FE458067
genomic: AATCCAGCGTGAACAACAGCGGAAGCAAGAGCAAGACCTCTGTTGTCAAGgtgggtcttc ... ctactaccagAACGAAGGCGGTGTAAAGTCGTCCAAGGCACCCCCCAAGGAGGAGGACGAA
EST: AATCCAGCGTGAACAACAGCGGAAGCAAGAGCAAGACCTCTGTTGTCAAG AACGAAGGCGGTGTAAAGTCGTCCAAGGCACCCCCCAAGGAGGAGGACGAAEST: gi|169082737|gb|FE486751.1|FE486751
genomic: AATCCAGCGTGAACAACAGCGGAAGCAAGAGCAAGACCTCTGTTGTCAAGgtgggtcttc ... ctactaccagAACGAAGGCGGTGTAAAGTCGTCCAAGGCACCCCCCAAGGAGGAGGACGAA
EST: AATCCAGCGTGAACAACAGCGGAAGCAAGAGCAAGACCTCTGTTGTCAAG AACGAAGGCGGTGTAAAGTCGTCCAAGGCACCCCCGAAGGAGGAGGACGAAEST: gi|169049976|gb|FE458068.1|FE458068
genomic: AATCCAGCGTGAACAACAGCGGAAGCAAGAGCAAGACCTCTGTTGTCAAGgtgggtcttc ... ctactaccagAACGAAGGCGGTGTAAAGTCGTCCAAGGCACCCCCCAAGGAGGAGGACGAA
EST: AATCCAGCGTGAACAACAGCGGAAGCAAGAGCAAGACCTCTGTTGTCAAG AACGAANGCGGTGTAAAGTEST: gi|169082938|gb|FE491138.1|FE491138
genomic: AATCCAGCGTGAACAACAGCGGAAGCAAGAGCAAGACCTCTGTTGTCAAGgtgggtcttc ... ctactaccagAACGAAGGCGGTGTAAAGT
EST: AATCCAGCGTGAACAACAGCGGAAGCAAGAGCAAGACCTCTGTTGTCAAG AACGAAGGCGGTGTAAAGTCGTCCAAGGCACCCCCGAAGGAGGAGGACGAA
genomic: AATCCAGCGTGAACAACAGCGGAAGCAAGAGCAAGACCTCTGTTGTCAAGgtgggtcttc ... ctactaccagAACGAAGGCGGTGTAAAGTCGTCCAAGGCACCCCCCAAGGAGGAGGACGAA
gtgggtcttcgatctttctcctttctctgtttttactaacagctactaccagAACGAAGGCGGTGTAAAGTCGTCCAAGGCACCCCCCAAGGAGGAGGACGAAGCCTTTGACGACGAAGACGAAGAGCACGGTGACACACAGTGTGGAACTT
tactaac putative branch site (score: 82)
tttttactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtcttcgatctttctcctttctctgtttttactaacagctactaccagAACGAAGGCGGTGTAAAGTCGTCCAAGGCACCCCCCAAGGAGGAGGACGAAGCCTTTGACGACGAAGACGAAGAGCACGGTGACACACAGTGTGGAACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA