1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttagtgcttttgtttatcttccaagttttgtccgacagtttgattagtattcttcttgttggtactcgctgttccttttttcttgtcaacgattgtggtagatctgagattttgtcttttttccatttgatgcagGAAACGACTGTTTGGGATGATGAATGAGCTACCAACGGTTTTCGATACTGTCACTGGAAGGAAACCTGTGAAAGAGAAATCCAGCGTGAACAACAGCGGA
species | Selaginella moellendorffii |
transcript | EFJ23237 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GACAAGAGTGAAAG GAAACGACTGTTTGGGATGATGAATGAGCTACCAACGGTTTTCGACACTGTEST: gi|169099117|gb|FE502839.1|FE502839
genomic: GACAAGAGTGAAAGgttagtgctt ... tttgatgcagGAAACGACTGTTTGGGATGATGAATGAGCTACCAACGGTTTTCGATACTGT
EST: CTCTACGCAGTCGCGTTTTATCACGGTGCCCGCCTCGACAAGAGTGAAAG GAAACGACTGTTTGGGATGATGAATGAGCTACCAACGGTTTTCGATACTGTEST: gi|169049976|gb|FE458068.1|FE458068
genomic: CTCTACGCAGTCGCGTTTTATCACGGTGCCCGCCTCGACAAGAGTGAAAGgttagtgctt ... tttgatgcagGAAACGACTGTTTGGGATGATGAATGAGCTACCAACGGTTTTCGATACTGT
EST: CTCTACGCAGTCGCGTTTTATCACGGTGCCCGCCTCGACAAGAGTGAAAG GAAACGACTGTTTGGGATGATGAATGAGCTACCAACGGTTTTCGATACTGTEST: gi|169082938|gb|FE491138.1|FE491138
genomic: CTCTACGCAGTCGCGTTTTATCACGGTGCCCGCCTCGACAAGAGTGAAAGgttagtgctt ... tttgatgcagGAAACGACTGTTTGGGATGATGAATGAGCTACCAACGGTTTTCGATACTGT
EST: CTCTACGCAGTCGCGTTTTATCACGGTGCCCGCCTCGACAAGAGTGAAAG GAAACGACTGTTTGGGATGATGAATGAGCTACCAACGGTTTTCGACACTGT
genomic: CTCTACGCAGTCGCGTTTTATCACGGTGCCCGCCTCGACAAGAGTGAAAGgttagtgctt ... tttgatgcagGAAACGACTGTTTGGGATGATGAATGAGCTACCAACGGTTTTCGATACTGT
tcttgtcaacgattgtggtagatctgagattttgtcttttttccatttgatgcagGAAACGACTGTTTGGGATGATGAATGAGCTACCAACGGTTTTCGATACTGTCACTGGAAGGAAACCTGTGAAAGAGAAATCCAGCGTGAACAACAGCGGA
atttgat putative branch site (score: 70)
ttttgtcttttttcca CT-rich tract
attttgtctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgcttttgtttatcttccaagttttgtccgacagtttgattagtattcttcttgttggtactcgctgttccttttttcttgtcaacgattgtggtagatctgagattttgtcttttttccatttgatgcagGAAACGACTGTTTGGGATGATGAATGAGCTACCAACGGTTTTCGATACTGTCACTGGAAGGAAACCTGTGAAAGAGAAATCCAGCGTGAACAACAGCGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA