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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCGTAGCAGCAAACGAATTTCGGGTCTTCACGACAAAGgtacgactgtttcgtttttcatgcgcaaaaatgataggcctgagcgtcacttttatag

Basic information

species Selaginella moellendorffii
transcript EFJ22644
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169042532|gb|FE451000.1|FE451000
EST:     AACGAATTTCGGGTCTTCACGACAAAG                         GGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCG
genomic: AACGAATTTCGGGTCTTCACGACAAAGgtacgactgt ... acttttatagGGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCG
EST: gi|169058213|gb|FE465993.1|FE465993
EST:     GTTCGTAGCAGCAAACGAATTTCGGGTCTTCACGACAAAG                         GGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCG
genomic: GTTCGTAGCAGCAAACGAATTTCGGGTCTTCACGACAAAGgtacgactgt ... acttttatagGGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCG
EST: gi|169083738|gb|FE491454.1|FE491454
EST:     GTTCGTAGCAGCAAACGAATTTCGGGTCTTCACGACAAAG                         GGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCG
genomic: GTTCGTAGCAGCAAACGAATTTCGGGTCTTCACGACAAAGgtacgactgt ... acttttatagGGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCG
EST: gi|169083737|gb|FE491453.1|FE491453
EST:     GTTCGTAGCAGCAAACGAATTTCGGGTCTTCACGACAAAG                         GGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCG
genomic: GTTCGTAGCAGCAAACGAATTTCGGGTCTTCACGACAAAGgtacgactgt ... acttttatagGGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCG
EST: gi|169048107|gb|FE456822.1|FE456822
EST:     GTTCGTAGCAGCAAACGAATTTCGGGTCTTCACGACAAAG                         GGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCG
genomic: GTTCGTAGCAGCAAACGAATTTCGGGTCTTCACGACAAAGgtacgactgt ... acttttatagGGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCG
EST: gi|169058212|gb|FE465992.1|FE465992
EST:     GTTCGTAGCAGCAAACGAATTTCGGGTCTTCACGACAAAG                         GGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCG
genomic: GTTCGTAGCAGCAAACGAATTTCGGGTCTTCACGACAAAGgtacgactgt ... acttttatagGGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCG
EST: gi|169048106|gb|FE456821.1|FE456821
EST:     TCACGACAAAG                         GGAAAGCCGCGGTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCG
genomic: TCACGACAAAGgtacgactgt ... acttttatagGGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 8

GTTCGTAGCAGCAAACGAATTTCGGGTCTTCACGACAAAGgtacgactgt ... acttttatagGGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCGGGGAACTGCTATGTCTGCAAAG




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