1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacgactgtttcgtttttcatgcgcaaaaatgataggcctgagcgtcacttttatagGGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCGGGGAACTGCTATGTCTGCAAAG
species | Selaginella moellendorffii |
transcript | EFJ22644 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACGAATTTCGGGTCTTCACGACAAAG GGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCGEST: gi|169058213|gb|FE465993.1|FE465993
genomic: AACGAATTTCGGGTCTTCACGACAAAGgtacgactgt ... acttttatagGGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCG
EST: GTTCGTAGCAGCAAACGAATTTCGGGTCTTCACGACAAAG GGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCGEST: gi|169083738|gb|FE491454.1|FE491454
genomic: GTTCGTAGCAGCAAACGAATTTCGGGTCTTCACGACAAAGgtacgactgt ... acttttatagGGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCG
EST: GTTCGTAGCAGCAAACGAATTTCGGGTCTTCACGACAAAG GGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCGEST: gi|169083737|gb|FE491453.1|FE491453
genomic: GTTCGTAGCAGCAAACGAATTTCGGGTCTTCACGACAAAGgtacgactgt ... acttttatagGGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCG
EST: GTTCGTAGCAGCAAACGAATTTCGGGTCTTCACGACAAAG GGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCGEST: gi|169048107|gb|FE456822.1|FE456822
genomic: GTTCGTAGCAGCAAACGAATTTCGGGTCTTCACGACAAAGgtacgactgt ... acttttatagGGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCG
EST: GTTCGTAGCAGCAAACGAATTTCGGGTCTTCACGACAAAG GGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCGEST: gi|169058212|gb|FE465992.1|FE465992
genomic: GTTCGTAGCAGCAAACGAATTTCGGGTCTTCACGACAAAGgtacgactgt ... acttttatagGGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCG
EST: GTTCGTAGCAGCAAACGAATTTCGGGTCTTCACGACAAAG GGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCGEST: gi|169048106|gb|FE456821.1|FE456821
genomic: GTTCGTAGCAGCAAACGAATTTCGGGTCTTCACGACAAAGgtacgactgt ... acttttatagGGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCG
EST: TCACGACAAAG GGAAAGCCGCGGTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCG
genomic: TCACGACAAAGgtacgactgt ... acttttatagGGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCG
cgactgtttcgtttttcatgcgcaaaaatgataggcctgagcgtcacttttatagGGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCGGGGAACTGCTATGTCTGCAAAG
tcactttt CT-rich tract
aaaaatgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgactgtttcgtttttcatgcgcaaaaatgataggcctgagcgtcacttttatagGGAAAGCCGCGTTAATTGAAATGGAACTCTTGCACCGAGACATCGATACCGGGGAACTGCTATGTCTGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG