1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgaatgcatcgtcggtcggactctcgcttaacttaactgctttcccatattaaagATGGCCGGGTCAATCCGGAGGGCTTGGCCTACTACAACAGTCTCATCAACAGTCTCCTCGAGCATG
species | Selaginella moellendorffii |
transcript | EFJ22622 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGGGGTCAATGCATATCGTTTCTCTATTTCTTGGACCCGTCTTTTCCCAG ATGGCCGGGTCAATCCGGAGGGCTTGGCCTACTACAACAGTCTCATCAACAEST: gi|169073317|gb|FE481094.1|FE481094
genomic: CGGGGTCAATGCATATCGTTTCTCTATTTCTTGGACCCGTCTTTTCCCAGgtgaatgcat ... catattaaagATGGCCGGGTCAATCCGGAGGGCTTGGCCTACTACAACAGTCTCATCAACA
EST: CGGGGTCAATGCATATCGTTTCTCTATTTCTTGGACCCGTCTTTTCCCAG ATGGCCGGGTCAATCCGGAGGGCTTGGCCTACTACAACAGTCTCATCAACAEST: gi|169062645|gb|FE470315.1|FE470315
genomic: CGGGGTCAATGCATATCGTTTCTCTATTTCTTGGACCCGTCTTTTCCCAGgtgaatgcat ... catattaaagATGGCCGGGTCAATCCGGAGGGCTTGGCCTACTACAACAGTCTCATCAACA
EST: CGGGGTCAATGCATATCGTTTCTCTATTTCTTGGACCCGTCTTTTCCCAG ATGGCCGGGTCAATCCGGAGGGCTTGGCCTACTACAACAGTCTCATCAACAEST: gi|169018615|gb|FE427528.1|FE427528
genomic: CGGGGTCAATGCATATCGTTTCTCTATTTCTTGGACCCGTCTTTTCCCAGgtgaatgcat ... catattaaagATGGCCGGGTCAATCCGGAGGGCTTGGCCTACTACAACAGTCTCATCAACA
EST: CGGGGTCAATGCATATCGTTTCTCTATTTCTTGGACCCGTCTTTTCCCAG ATGGCCGGGTCAATCCGGAGGGCTTGGCCTACTACAACAGTCTCATCAACA
genomic: CGGGGTCAATGCATATCGTTTCTCTATTTCTTGGACCCGTCTTTTCCCAGgtgaatgcat ... catattaaagATGGCCGGGTCAATCCGGAGGGCTTGGCCTACTACAACAGTCTCATCAACA
tgaatgcatcgtcggtcggactctcgcttaacttaactgctttcccatattaaagATGGCCGGGTCAATCCGGAGGGCTTGGCCTACTACAACAGTCTCATCAACAGTCTCCTCGAGCATG
acttaac putative branch site (score: 397)
ctgctttccc CT-rich tract
atattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatgcatcgtcggtcggactctcgcttaacttaactgctttcccatattaaagATGGCCGGGTCAATCCGGAGGGCTTGGCCTACTACAACAGTCTCATCAACAGTCTCCTCGAGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC