1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttagcgaccttccatattaaactattactagtagtattagtttaaactgatttccttgtacttattacggaccttcacagGATTCAACCAGGTGCACGCTCCTTATAAGGACTCAATGGATGATAATGAGAGGATTCAGTACCTTACAGGCCACTACACCAACATGGCGCAAGCAATAAG
species | Selaginella moellendorffii |
transcript | EFJ22622 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTACATCAAGAAAGAATACAATAACCCCACCATTTTTGTCACTGAAAACG GATTCAACCAGGTGCACGCTCCTTATAAGGACTCAATGGATGATAATGAGAEST: gi|169062644|gb|FE470314.1|FE470314
genomic: CTACATCAAGAAAGAATACAATAACCCCACCATTTTTGTCACTGAAAACGgttagcgacc ... accttcacagGATTCAACCAGGTGCACGCTCCTTATAAGGACTCAATGGATGATAATGAGA
EST: CTACATCAAGAAAGAATACAATAACCCCACCATTTTTGTCACTGAAAACG GATTCAACCAGGTGCACGCTCCTTATAAGGACTCAATGGATGATAATGAGAEST: gi|169101384|gb|FE502527.1|FE502527
genomic: CTACATCAAGAAAGAATACAATAACCCCACCATTTTTGTCACTGAAAACGgttagcgacc ... accttcacagGATTCAACCAGGTGCACGCTCCTTATAAGGACTCAATGGATGATAATGAGA
EST: CTACATCAAGAAAGAATACAATAACCCCACCATTTTTGTCACTGAAAACG GATTCAACCAGGTGCACGCTCCTTATAAGGACTCAATGGATGATAATGAGA
genomic: CTACATCAAGAAAGAATACAATAACCCCACCATTTTTGTCACTGAAAACGgttagcgacc ... accttcacagGATTCAACCAGGTGCACGCTCCTTATAAGGACTCAATGGATGATAATGAGA
tactagtagtattagtttaaactgatttccttgtacttattacggaccttcacagGATTCAACCAGGTGCACGCTCCTTATAAGGACTCAATGGATGATAATGAGAGGATTCAGTACCTTACAGGCCACTACACCAACATGGCGCAAGCAATAAG
aactgat putative branch site (score: 266)
ccttcac putative PPT
tagtattagtttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcgaccttccatattaaactattactagtagtattagtttaaactgatttccttgtacttattacggaccttcacagGATTCAACCAGGTGCACGCTCCTTATAAGGACTCAATGGATGATAATGAGAGGATTCAGTACCTTACAGGCCACTACACCAACATGGCGCAAGCAATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA