1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttcctcccttgtgttttcccctcgctcttgctacctaggcttgacggacgtggtgtggcttgcgggcgcagTATTTCCTGTACCAGCTGCTGCGGGGCCTCAAGTACGTGCACTCTGCAAACGTTCTCCACCGGGACCTCAAGCCCAGCAATCTGCTCCTCAACGCCAACT
species | Selaginella moellendorffii |
transcript | EFJ22596 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACACCAGATCATCCGCTCCAACCAGCAGCTCACGGACGACCACTGTCAG TATTTCCTGTACCAGCTGCTGCGGGGCCTCAAGTACGTGCACTCTGCAAACEST: gi|169061150|gb|FE469041.1|FE469041
genomic: TACACCAGATCATCCGCTCCAACCAGCAGCTCACGGACGACCACTGTCAGgttcctccct ... gcgggcgcagTATTTCCTGTACCAGCTGCTGCGGGGCCTCAAGTACGTGCACTCTGCAAAC
EST: TACACCAGATCATCCGCTCCAACCAGCAGCTCACGGACGACCACTGTCAG TATTTCCTGTACCAGCTGCTGCGGGGCCTCAAGTACGTGCACTCTGCAAAC
genomic: TACACCAGATCATCCGCTCCAACCAGCAGCTCACGGACGACCACTGTCAGgttcctccct ... gcgggcgcagTATTTCCTGTACCAGCTGCTGCGGGGCCTCAAGTACGTGCACTCTGCAAAC
tcccctcgctcttgctacctaggcttgacggacgtggtgtggcttgcgggcgcagTATTTCCTGTACCAGCTGCTGCGGGGCCTCAAGTACGTGCACTCTGCAAACGTTCTCCACCGGGACCTCAAGCCCAGCAATCTGCTCCTCAACGCCAACT
gcttgac putative branch site (score: 33)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcctcccttgtgttttcccctcgctcttgctacctaggcttgacggacgtggtgtggcttgcgggcgcagTATTTCCTGTACCAGCTGCTGCGGGGCCTCAAGTACGTGCACTCTGCAAACGTTCTCCACCGGGACCTCAAGCCCAGCAATCTGCTCCTCAACGCCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC