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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATAGACTACGTAAGCTCACTTAATCGGGCTCTTCCAGCAGATATACGAGTTCTTGGATGGTGTCCTGTTCCTCCTGGATTTCATGCAAGgtatcactctcaaatttaagcattcactttgcgagtgctctgctgcgcag

Basic information

species Selaginella moellendorffii
transcript EFJ22557
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ22557 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: PP1S213_114V6.1 (Physcomitrella patens), 5'ss of exon 8
--------GAAATAGACTACGTAAGCTCACTTAATCGGGCTCTTCCAGCAGATATACGAGTTCTTGGATGGTGTCCTGTTCCTCCTGGATTTCATGCAAGgtatcactctc-aaatttaagcattcactttgcgagtgctctgctgcgcag--------------------------------------------------
        |||   ||||||||  |     | ||| |||| ||||||| |||||||||||| ||||| ||||| |||||||| || || ||| |||| ||||||     ||  || ||   ||     ||    | || | | ||  |||                                                   
ATGAAGACGAATATGACTACGTCGGAATCTTGAATAGGGCACTTCCAGAAGATATACGAGTGCTTGGTTGGTGCCCTGTTCCACCAGGGTTTAATGCCAGgtattttgatctgaacttgtccaccgttttaagtactgatattcta-gcaatgtctgaatactccaatcaagactcatctttattttaattatgtgggtgt