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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcactctcaaatttaagcattcactttgcgagtgctctgctgcgcagGTTCAGCTGTTTGTATCGGGAGTACAAGTACTTCTTCATCGACGATGGCTTAAACATAGAC

Basic information

species Selaginella moellendorffii
transcript EFJ22557
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ22557 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S213_114V6.1 (Physcomitrella patens), 3'ss of exon 8
-----------------------------------------------gtatcactctcaaattta-agcattcactttgcgagtgctctgctgcg--cagGTTCAGCTGTTTGTATCGGGAGTACAAGTACTTCTTCATCGACGATGGCTTAAACATAGAC
                                                |  |  | | || |||| | |||    |||    |     ||  | |  ||| ||||| ||| ||||||| || |||||||| |||||||||||||||||  | || || || 
tatagtagtgttttcacagaattctgtatacttgttttcaaatgtcaatgcctatgttaattttataacatatgttttcttcggtacatggagggttcagATTCAGTTGTATGTATCGTGAATACAAGTATTTCTTCATCGACGATGGTCTGAATATTGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatcactctcaaatttaagcattcactttgcgagtgctctgctgcgcagGTTCAGCTGTTTGTATCGGGAGTACAAGTACTTCTTCATCGACGATGGCTTAAACATAGAC
                                              ctctgct  CT-rich tract
              tcaaatttaa  TA-rich tract