1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aagtttgtttttttgcttgtgtgtggttgctgttgcacggatctggcactgggaagaagtcgttcgtacaattgtttttttctttctgcttgttttgcagGTGATTCAGCTCCAGGGCGACCAGCGAAAAAATGTCTCCAGTTCCTGGTACAG
species | Selaginella moellendorffii |
transcript | EFJ22545 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
gcactgggaagaagtcgttcgtacaattgtttttttctttctgcttgttttgcagGTGATTCAGCTCCAGGGCGACCAGCGAAAAAATGTCTCCAGTTCCTGGTACAG
ttgtttttttctttct CT-rich tract
aattgtttttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtttgtttttttgcttgtgtgtggttgctgttgcacggatctggcactgggaagaagtcgttcgtacaattgtttttttctttctgcttgttttgcagGTGATTCAGCTCCAGGGCGACCAGCGAAAAAATGTCTCCAGTTCCTGGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
aagtttg
- - - -ttttttt
- - - - - - - - - - - - - ttgctgt
- - - - - - - - - - - - - - - - - - - - - - - - - -ggaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgttcgt