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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCTTGCCTGCGAGAGGGAAAACGTTTACTGCCGCGAAGTTGACGAGATACTTACGTTGGCTGGGACATGATACCAAGCACTTCAACGTTGGAAAGgtaccgtcttcatctctgatgatagcttttcgtgccaactgagcttccactatttcatcgtgcag

Basic information

species Selaginella moellendorffii
transcript EFJ22544
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ22544 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 7
GTTGGCTTGCCTGCGAGAGGGAAAACGTTTACTGCCGCGAAGTTGACGAGATACTTACGTTGGCTGGGACATGATACCAAGCACTTCAACGTTGGAAAGgtaccgtcttcatctctgatgatagctt-ttcgtgccaactgagctt-ccactatttcatcgt-gcag-------------------------------------
||||||||||||||  |||| || || |||||||| || |||||||| |||||  |||| ||| ||||||||||||| || || || || |||||||||||    | ||    |   |||||   |  ||  |   | || | | |  || ||    | | | |  |                                     
GTTGGCTTGCCTGCTCGAGGAAAGACTTTTACTGCAGCAAAGTTGACAAGATATCTACGCTGGTTGGGACATGATACTAAACATTTTAATGTTGGAAAGgttagctattttgttgcaatgattcttgattttttttagcttatcctgtcattacgcgacccttgttggaaagattgactcaaacattgctccgtttctttgcag

upper sequence: EFJ22544 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: PP1S235_92V6.1 (Physcomitrella patens), 5'ss of exon 6
GTTGGCTTGCCTGCGAGAGGGAAAACGTTTACTGCCGCGAAGTTGACGAGATACTTACGTTGGCTGGGACATGATACCAAGCACTTCAACGTTGGAAAGgta----ccgtcttcatctctgatgatagcttttcgtgccaactgagcttccactatttcatcgtgcag-------------------------------
|||||| | |||||  ||||||| || ||||| || || ||| ||||||||||  |  | ||||| || ||||||||||| |||||||| ||||||||||||      |||| |   |  |  || ||        |     |||||||  ||||||     | | |                                
GTTGGCCTACCTGCTCGAGGGAAGACTTTTACAGCAGCTAAGCTGACGAGATATCTCAGGTGGCTTGGCCATGATACCAAACACTTCAATGTTGGAAAGgtaagcttagtctgctcattagtagacagtgaaagtagtattttgagctttaactattgtgagggggacagtcattgtctacttggttctggtgtttagt