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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgctagagcgaaatcttcttctaccactctgttaaattctgggattcgtgcctttccagGTTGGCTTGCCTGCGAGAGGGAAAACGTTTACTGCCGCGAAGTTGACGAGATACTTACGTTGGCTGGGACATGATACCAAGCACTTCAACGTTGGAAAG

Basic information

species Selaginella moellendorffii
transcript EFJ22544
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ22544 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: AT1G07110.1 (Arabidopsis thaliana), 3'ss of exon 6
--------------------------------------------------------------------------------------------------------------------------------gtacgctagagcgaaatcttcttctaccactctgttaaattctgggattcgtgcctttccagGTTGGCTTGCCTGCGAGAGGGAAAACGTTTACTGCCGCGAAGTTGACGAGATACTTACGTTGGCTGGGACATGATACCAAGCACTTCAACGTTGGAAAG
                                                                                                                                  |    | |   ||  ||   | | |   |       ||||  |  |        |   ||||||||||||||||  |||| || || |||||||| || |||||||| |||||  |||| ||| ||||||||||||| || || || || |||||||||
gtatttgtagccacatagatgttggtcatagtttctgcaggtcttttagcttatgtttcctagtttgattgtaaggagctggacgttgttgtggctggctattttatttaacttataaacgtaaatggaaaaaaaaaaaaaaagactggatgttctgattcacaccattcccg--tcaaaattgtattagGTTGGCTTGCCTGCTCGAGGAAAGACTTTTACTGCAGCAAAGTTGACAAGATATCTACGCTGGTTGGGACATGATACTAAACATTTTAATGTTGGAAAG

upper sequence: EFJ22544 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S235_92V6.1 (Physcomitrella patens), 3'ss of exon 5
----------------------------------gtacgctagagcgaaatctt--cttctaccactctgttaaattctgggattcgtgcctt---tccagGTTGGCTTGCCTGCGAGAGGGAAAACGTTTACTGCCGCGAAGTTGACGAGATACTTACGTTGGCTGGGACATGATACCAAGCACTTCAACGTTGGAAAG
                                  |   ||| ||   | ||| |  ||||| | |   ||||| || |||   ||       |   | ||||||||| | |||||  ||||||| || ||||| || || ||| ||||||||||  |  | ||||| || ||||||||||| |||||||| |||||||||
tacaacgaacttcttacattacaagcttaagttcgactgcttgaa-aatatcatagcttcttcaagcatgttacatactgaacttgtcatggtggattcagGTTGGCCTACCTGCTCGAGGGAAGACTTTTACAGCAGCTAAGCTGACGAGATATCTCAGGTGGCTTGGCCATGATACCAAACACTTCAATGTTGGAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagcgaaatcttcttctaccactctgttaaattctgggattcgtgcctttccagGTTGGCTTGCCTGCGAGAGGGAAAACGTTTACTGCCGCGAAGTTGACGAGATACTTACGTTGGCTGGGACATGATACCAAGCACTTCAACGTTGGAAAG
                                            tgcctttcc  CT-rich tract
                         tgttaaatt  TA-rich tract