1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgatagatttctccatggtttccatagccaattatctcatgtctctcttatcgcagGTGTTTACACCAACCTTCCCTCTCATATATATTCTTCTCCGACGAGCTCTAAGCAAGACGTGGAAGCGCCCGGCGAAGAGATGCCAATGAGGCGTCAATG
species | Selaginella moellendorffii |
transcript | EFJ22449 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CACCTATTTGCTGCACGTAACGAAAGACTATGGCAAGGACAACTCGATGG GTGTTTACACCAACCTTCCCTCTCATATATATTCTTCTCCGACGAGCTCTAEST: gi|169026886|gb|FE434237.1|FE434237
genomic: CACCTATTTGCTGCACGTAACGAAAGACTATGGCAAGGACAACTCGATGGgtatgataga ... cttatcgcagGTGTTTACACCAACCTTCCCTCTCATATATATTCTTCTCCGACGAGCTCTA
EST: CACCTATTTGCTGCACGTAACGAAAGACTATGGCAAGGACAACTCGATGG GTGTTTATACCAACCTTCCCTCTCATATATATTCTTCTCCGACGAGCTCTAEST: gi|169100905|gb|FE502235.1|FE502235
genomic: CACCTATTTGCTGCACGTAACGAAAGACTATGGCAAGGACAACTCGATGGgtatgataga ... cttatcgcagGTGTTTACACCAACCTTCCCTCTCATATATATTCTTCTCCGACGAGCTCTA
EST: CACCTATTTGCTGCACGTAACGAAAGACTATGGCAAGGACAACTCGATGG GTGTTTACACCAACCTTCCCTCTCATATATATTCTTCTCCGACGAGCTCTAEST: gi|169082615|gb|FE489086.1|FE489086
genomic: CACCTATTTGCTGCACGTAACGAAAGACTATGGCAAGGACAACTCGATGGgtatgataga ... cttatcgcagGTGTTTACACCAACCTTCCCTCTCATATATATTCTTCTCCGACGAGCTCTA
EST: CACCTATTTGCTGCACGTAACGAAAGACTATGGCAAGGACAACTCGATGG GTGTTTACACCAACCTTCCCTCTCATATATATTCTTCTCCGACGAGCTCTAEST: gi|169095049|gb|FE498023.1|FE498023
genomic: CACCTATTTGCTGCACGTAACGAAAGACTATGGCAAGGACAACTCGATGGgtatgataga ... cttatcgcagGTGTTTACACCAACCTTCCCTCTCATATATATTCTTCTCCGACGAGCTCTA
EST: CACCTATTTGCTGCACGTAACGAAAGACTATGGCAAGGACAACTCGATGG GTGTTTACACCAACCTTCCCTCTCATATATATTCTTCTCCGACGAGCTCTAEST: gi|169043582|gb|FE450804.1|FE450804
genomic: CACCTATTTGCTGCACGTAACGAAAGACTATGGCAAGGACAACTCGATGGgtatgataga ... cttatcgcagGTGTTTACACCAACCTTCCCTCTCATATATATTCTTCTCCGACGAGCTCTA
EST: CACCTATTTGCTGCACGTAACGAAAGACTATGGCAAGGACAACTCGATGG GTGTTTACACCAACCTTCCCTCTCATATATATTCTTCTCCGACGAGCTCTA
genomic: CACCTATTTGCTGCACGTAACGAAAGACTATGGCAAGGACAACTCGATGGgtatgataga ... cttatcgcagGTGTTTACACCAACCTTCCCTCTCATATATATTCTTCTCCGACGAGCTCTA
gatagatttctccatggtttccatagccaattatctcatgtctctcttatcgcagGTGTTTACACCAACCTTCCCTCTCATATATATTCTTCTCCGACGAGCTCTAAGCAAGACGTGGAAGCGCCCGGCGAAGAGATGCCAATGAGGCGTCAATG
tctcatgtctctctt CT-rich tract
aattatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatagatttctccatggtttccatagccaattatctcatgtctctcttatcgcagGTGTTTACACCAACCTTCCCTCTCATATATATTCTTCTCCGACGAGCTCTAAGCAAGACGTGGAAGCGCCCGGCGAAGAGATGCCAATGAGGCGTCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG