1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagttcgcgttcttctttcctttctgcttttggtttagacttacgagcttgctctcacaccagGTCATGAGTGCAAAAGCTCTGGGAATCGCCATCAAGCTTACATTCCAGGGCTCTAATCAGCTTATTTACTCGCAAACGTGGGTGTTTGGAATGGTTCTTG
species | Selaginella moellendorffii |
transcript | EFJ22449 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCAAGTTATGGTCTACGTTGGCATCTGCTCCTTGATGGGATCTCTNTCC GTCATGAGTGCAAAAGCTCTGGGAATCGCCATCAAGCTTACATTCCAGGGCEST: gi|169026886|gb|FE434237.1|FE434237
genomic: CTCAAGTTATGGTCTACGTTGGCATCTGCTCCTTGATGGGATCTCTTTCCgtaagttcgc ... ctcacaccagGTCATGAGTGCAAAAGCTCTGGGAATCGCCATCAAGCTTACATTCCAGGGC
EST: CTCAAGTTATGGTCTACGTTGGCATCTGCTCCTTGATGGGATCTCTTTCC GTCATGAGTGCAAAAGCTCTGGGAATCGCCATCAAGCTTACATTCCAGGGCEST: gi|169082616|gb|FE489087.1|FE489087
genomic: CTCAAGTTATGGTCTACGTTGGCATCTGCTCCTTGATGGGATCTCTTTCCgtaagttcgc ... ctcacaccagGTCATGAGTGCAAAAGCTCTGGGAATCGCCATCAAGCTTACATTCCAGGGC
EST: CTCAAGTTATGGTCTACGTTGGCATCTGCTCCTTGATGGGATCTCTTTCC GTCATGAGTGCAAAAGCTCTGGGAATCGCCATCAAGCTTACATTCCAGGGCEST: gi|169100905|gb|FE502235.1|FE502235
genomic: CTCAAGTTATGGTCTACGTTGGCATCTGCTCCTTGATGGGATCTCTTTCCgtaagttcgc ... ctcacaccagGTCATGAGTGCAAAAGCTCTGGGAATCGCCATCAAGCTTACATTCCAGGGC
EST: CTCAAGTTATGGTCTACGTTGGCATCTGCTCCTTGATGGGATCTCTTTCC GTCATGAGTGCAAAAGCTCTGGGAATCGCCATCAAGCTTACATTCCAGGGCEST: gi|169082615|gb|FE489086.1|FE489086
genomic: CTCAAGTTATGGTCTACGTTGGCATCTGCTCCTTGATGGGATCTCTTTCCgtaagttcgc ... ctcacaccagGTCATGAGTGCAAAAGCTCTGGGAATCGCCATCAAGCTTACATTCCAGGGC
EST: CTCAAGTTATGGTCTACGTTGGCATCTGCTCCTTGATGGGATCTCTTTCC GTCATGAGTGCAAAAGCTCTGGGAATCGCCATCAAGCTTACATTCCAGGGCEST: gi|169098839|gb|FE502236.1|FE502236
genomic: CTCAAGTTATGGTCTACGTTGGCATCTGCTCCTTGATGGGATCTCTTTCCgtaagttcgc ... ctcacaccagGTCATGAGTGCAAAAGCTCTGGGAATCGCCATCAAGCTTACATTCCAGGGC
EST: CTCAAGTTATGGTCTACGTTGGCATCTGCTCCTTGATGGGATCTCTTTCC GTCATGAGTGCAAAAGCTCTGGGAATCGCCATCAAGCTTACATTCCAGGGCEST: gi|169095049|gb|FE498023.1|FE498023
genomic: CTCAAGTTATGGTCTACGTTGGCATCTGCTCCTTGATGGGATCTCTTTCCgtaagttcgc ... ctcacaccagGTCATGAGTGCAAAAGCTCTGGGAATCGCCATCAAGCTTACATTCCAGGGC
EST: CTCAAGTTATGGTCTACGTTGGCATCTGCTCCTTGATGGGATCTCTTTCC GTCATGAGTGCAAAAGCTCTGGGAATCGCCATCAAGCTTACATTCCAGGGCEST: gi|169043583|gb|FE450805.1|FE450805
genomic: CTCAAGTTATGGTCTACGTTGGCATCTGCTCCTTGATGGGATCTCTTTCCgtaagttcgc ... ctcacaccagGTCATGAGTGCAAAAGCTCTGGGAATCGCCATCAAGCTTACATTCCAGGGC
EST: CTCAAGTTATGGTCTACGTTGGCATCTGCTCCTTGATGGGATCTCTTTCC GTCATGAGTGCAAAAGCTCTGGGAATCGCCATCAAGCTTACATTCCAGGGC
genomic: CTCAAGTTATGGTCTACGTTGGCATCTGCTCCTTGATGGGATCTCTTTCCgtaagttcgc ... ctcacaccagGTCATGAGTGCAAAAGCTCTGGGAATCGCCATCAAGCTTACATTCCAGGGC
gttcttctttcctttctgcttttggtttagacttacgagcttgctctcacaccagGTCATGAGTGCAAAAGCTCTGGGAATCGCCATCAAGCTTACATTCCAGGGCTCTAATCAGCTTATTTACTCGCAAACGTGGGTGTTTGGAATGGTTCTTG
cttgctctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcgcgttcttctttcctttctgcttttggtttagacttacgagcttgctctcacaccagGTCATGAGTGCAAAAGCTCTGGGAATCGCCATCAAGCTTACATTCCAGGGCTCTAATCAGCTTATTTACTCGCAAACGTGGGTGTTTGGAATGGTTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT