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gtaagtccggttgatcgaggtttttttttttcgcttagaactctcacaattatcacagAGCTTGCGAAAGTGTCAGCTTTTGAAAGCTGTGAAGGAAACCCCAAAGCAGCTCGACTCACTCG
species | Selaginella moellendorffii |
transcript | EFJ22379 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCTCGAACTTGGATCCACTGCAGCAGTTCTCGGACGAGCAAATCTGGCAA AGCTTGCGAAAGTGTCAGCTTTTGAAAGCTGTGAAGGAAACCCCAAAGCAGEST: gi|169066719|gb|FE473603.1|FE473603
genomic: GCTCGAACTTGGATCCACTGCAGCAGTTCTCGGACGAGCAAATCTGGCAAgtaagtccgg ... attatcacagAGCTTGCGAAAGTGTCAGCTTTTGAAAGCTGTGAAGGAAACCCCAAAGCAG
EST: GCTCGAACTTGGATCCACTGCAGCAGTTCTCGGACGAGCAAATCTGGCAA AGCTTGCGAAAGTGTCAGCTTTTGAAAGCTGTGAAGGAAACCCCAAAGCAGEST: gi|169020384|gb|FE431631.1|FE431631
genomic: GCTCGAACTTGGATCCACTGCAGCAGTTCTCGGACGAGCAAATCTGGCAAgtaagtccgg ... attatcacagAGCTTGCGAAAGTGTCAGCTTTTGAAAGCTGTGAAGGAAACCCCAAAGCAG
EST: GCTCGAACTTGGATCCACTGCAGCAGTTCTCGGACGAGCAAATCTGGCAA AGCTTGCGAAAGTGTCAGCTTTTGAAAGCTGTGAAGGAAACCCCAAAGCAGEST: gi|169104177|gb|FE507166.1|FE507166
genomic: GCTCGAACTTGGATCCACTGCAGCAGTTCTCGGACGAGCAAATCTGGCAAgtaagtccgg ... attatcacagAGCTTGCGAAAGTGTCAGCTTTTGAAAGCTGTGAAGGAAACCCCAAAGCAG
EST: GCTCGAACTTGGATCCACTGCAGCAGTTCTCGGACGAGCAAATCTGGCAA AGCTTGCGAAAGTGTCAGCTTTTGAAAGCTGTGAAGGAAACCCCAAAGCAGEST: gi|169027133|gb|FE435043.1|FE435043
genomic: GCTCGAACTTGGATCCACTGCAGCAGTTCTCGGACGAGCAAATCTGGCAAgtaagtccgg ... attatcacagAGCTTGCGAAAGTGTCAGCTTTTGAAAGCTGTGAAGGAAACCCCAAAGCAG
EST: GCTCGAACTTGGATCCACTGCAGCAGTTCTCGGACGAGCAAATCTGGCAA AGCTTGCGAAAGTGTCAGCTTTTGAAAGCTGTGAAGGAAACCCCAAAGCAG
genomic: GCTCGAACTTGGATCCACTGCAGCAGTTCTCGGACGAGCAAATCTGGCAAgtaagtccgg ... attatcacagAGCTTGCGAAAGTGTCAGCTTTTGAAAGCTGTGAAGGAAACCCCAAAGCAG
agtccggttgatcgaggtttttttttttcgcttagaactctcacaattatcacagAGCTTGCGAAAGTGTCAGCTTTTGAAAGCTGTGAAGGAAACCCCAAAGCAGCTCGACTCACTCG
ctctcac putative branch site (score: 3)
aggttttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtccggttgatcgaggtttttttttttcgcttagaactctcacaattatcacagAGCTTGCGAAAGTGTCAGCTTTTGAAAGCTGTGAAGGAAACCCCAAAGCAGCTCGACTCACTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC