1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagtcggggaagcaagcatcttttttcttatcttttttcgcagGATACATGGTTGAGTGTGATTCTCCTCAAGCTCTGCTTGACAACCAAAACTCTCTCTTTGCAAAGCTGGTGGCGGAATACTGGTCAAGTTGTGATAAGTG
species | Selaginella moellendorffii |
transcript | EFJ22379 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCGAATTTCCACTGTTATAGACAGTGATCTCATTCTCGGCCTCAAAAATG GATACATGGTTGAGTGTGATTCTCCTCAAGCTCTGCTTGACAACCAAAACTEST: gi|169066719|gb|FE473603.1|FE473603
genomic: TCGAATTTCCACTGTTATAGACAGTGATCTCATTCTCGGCCTCAAAAATGgtaagtcggg ... tttttcgcagGATACATGGTTGAGTGTGATTCTCCTCAAGCTCTGCTTGACAACCAAAACT
EST: TCGAATTTCCACTGTTATAGACAGTGATCTCATTCTCGGCCTCAAAAATG GATACATGGTTGAGTGTGATTCTCCTCAAGCTCTGCTTGACAACCAAAACTEST: gi|169020384|gb|FE431631.1|FE431631
genomic: TCGAATTTCCACTGTTATAGACAGTGATCTCATTCTCGGCCTCAAAAATGgtaagtcggg ... tttttcgcagGATACATGGTTGAGTGTGATTCTCCTCAAGCTCTGCTTGACAACCAAAACT
EST: TCGAATTTCCACTGTTATAGACAGTGATCTCATTCTCGGCCTCAAAAATG GATACATGGTTGAGTGTGATTCTCCTCAAGCTCTGCTTGACAACCAAAACTEST: gi|169104177|gb|FE507166.1|FE507166
genomic: TCGAATTTCCACTGTTATAGACAGTGATCTCATTCTCGGCCTCAAAAATGgtaagtcggg ... tttttcgcagGATACATGGTTGAGTGTGATTCTCCTCAAGCTCTGCTTGACAACCAAAACT
EST: TCGAATTTCCACTGTTATAGACAGTGATCTCATTCTCGGCCTCAAAAATG GATACATGGTTGAGTGTGATTCTCCTCAAGCTCTGCTTGACAACCAAAACTEST: gi|169027133|gb|FE435043.1|FE435043
genomic: TCGAATTTCCACTGTTATAGACAGTGATCTCATTCTCGGCCTCAAAAATGgtaagtcggg ... tttttcgcagGATACATGGTTGAGTGTGATTCTCCTCAAGCTCTGCTTGACAACCAAAACT
EST: TCGAATTTCCACTGTTATAGACAGTGATCTCATTCTCGGCCTCAAAAATG GATACATGGTTGAGTGTGATTCTCCTCAAGCTCTGCTTGACAACCAAAACT
genomic: TCGAATTTCCACTGTTATAGACAGTGATCTCATTCTCGGCCTCAAAAATGgtaagtcggg ... tttttcgcagGATACATGGTTGAGTGTGATTCTCCTCAAGCTCTGCTTGACAACCAAAACT
gtaagtcggggaagcaagcatcttttttcttatcttttttcgcagGATACATGGTTGAGTGTGATTCTCCTCAAGCTCTGCTTGACAACCAAAACTCTCTCTTTGCAAAGCTGGTGGCGGAATACTGGTCAAGTTGTGATAAGTG
catcttttttcttatc CT-rich tract
atcttttttcttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcggggaagcaagcatcttttttcttatcttttttcgcagGATACATGGTTGAGTGTGATTCTCCTCAAGCTCTGCTTGACAACCAAAACTCTCTCTTTGCAAAGCTGGTGGCGGAATACTGGTCAAGTTGTGATAAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG