1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatttttgctagaaaaaaaagaagaagaagaacgaagttaatgagatttgttttgcagGGAGACATTGCGGTTGTGCAGCCGCGAAAGCTTCCTCCATTCGAGAAATGGAAGTTTGGAGAGAAGAAATATGTGCAATACCTTGTCGACCAG
species | Selaginella moellendorffii |
transcript | EFJ22374 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCCATTCTACGAGCAACTTGTGAAGCGAATTCAGCTCTTGGAAAGCAAG GGAGACATTGCGGTTGTGCAGCCGCGAAAGCTTCCTCCATTCGAGAAATGGEST: gi|70669054|gb|DN837631.1|DN837631
genomic: TGCCATTCTACGAGCAACTTGTGAAGCGAATTCAGCTCTTGGAAAGCAAGgtatttttgc ... tgttttgcagGGAGACATTGCGGTTGTGCAGCCGCGAAAGCTTCCTCCATTCGAGAAATGG
EST: TGCCATTCTACGAGCAACTTGTGAAGCGAATTCAGCTCTTGGAAAGCAAG GGAGACATTGCGGTTGTGCAGCCGCGAAAGCTTCCTCCATTCGAGAAATGG
genomic: TGCCATTCTACGAGCAACTTGTGAAGCGAATTCAGCTCTTGGAAAGCAAGgtatttttgc ... tgttttgcagGGAGACATTGCGGTTGTGCAGCCGCGAAAGCTTCCTCCATTCGAGAAATGG
ttttgctagaaaaaaaagaagaagaagaacgaagttaatgagatttgttttgcagGGAGACATTGCGGTTGTGCAGCCGCGAAAGCTTCCTCCATTCGAGAAATGGAAGTTTGGAGAGAAGAAATATGTGCAATACCTTGTCGACCAG
agttaat putative branch site (score: 14)
tttgtttt putative PPT
tagaaaaaaaagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttttgctagaaaaaaaagaagaagaagaacgaagttaatgagatttgttttgcagGGAGACATTGCGGTTGTGCAGCCGCGAAAGCTTCCTCCATTCGAGAAATGGAAGTTTGGAGAGAAGAAATATGTGCAATACCTTGTCGACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA