1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatagaactttctttgtgctttgtttgttctttgcagaagcaattgcttcctttagGAAGTGAAGCACCGGAAGAGAAGGCTGCACATTGATCCCGAGGTCGCAGCGAAAGGAAAGGTGGATTTTGTGCAAGTAGAGTCGTGGGACGGAGGAGAGA
species | Selaginella moellendorffii |
transcript | EFJ22374 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTACGAAAAAGCAGCAGGAGCTCAAGAGTGTGGTGAAAGAAGTGGAGAAG GAAGTGAAGCACCGGAAGAGAAGGCTGCACATTGATCCCGAGGTCGCAGCGEST: gi|70669054|gb|DN837631.1|DN837631
genomic: CTACGAAAAAGCAGCAGGAGCTCAAGAGTGTGGTGAAAGAAGTGGAGAAGgtatagaact ... cttcctttagGAAGTGAAGCACCGGAAGAGAAGGCTGCACATTGATCCCGAGGTCGCAGCG
EST: CTACGAAAAAGCAGCAGGAGCTCAAGAGTGTGGTGAAAGAAGTGGAGAAG GAAGTGAAGCACCGGAAGAGAAGGCTGCACATTGATCCCGAGGTCGCAGCG
genomic: CTACGAAAAAGCAGCAGGAGCTCAAGAGTGTGGTGAAAGAAGTGGAGAAGgtatagaact ... cttcctttagGAAGTGAAGCACCGGAAGAGAAGGCTGCACATTGATCCCGAGGTCGCAGCG
atagaactttctttgtgctttgtttgttctttgcagaagcaattgcttcctttagGAAGTGAAGCACCGGAAGAGAAGGCTGCACATTGATCCCGAGGTCGCAGCGAAAGGAAAGGTGGATTTTGTGCAAGTAGAGTCGTGGGACGGAGGAGAGA
ttgcttccttt CT-rich tract
tttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagaactttctttgtgctttgtttgttctttgcagaagcaattgcttcctttagGAAGTGAAGCACCGGAAGAGAAGGCTGCACATTGATCCCGAGGTCGCAGCGAAAGGAAAGGTGGATTTTGTGCAAGTAGAGTCGTGGGACGGAGGAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA