1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagtggcttgatttccgttgcttcaattttgtaaacactctcgcgacagACTCGCGAGTTGCCTACTGGGAGCCTGCAAAGTTCGTCGCCAAGCTGAGAGAAAACAAGACGGACAAGAATCTATTGCTGTTCAAGTGTGATTTTGGAGC
species | Selaginella moellendorffii |
transcript | EFJ22335 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTCTTGCCTCGTGAGTATCCAGATATTCTTGTAACCGGAGGACTTCATG ACTCGCGAGTTGCCTACTGGGAGCCTGCAAAGTTCGTCGCCAAGCTGAGAGEST: gi|169088153|gb|FE496486.1|FE496486
genomic: GTCTTGCCTCGTGAGTATCCAGATATTCTTGTAACCGGAGGACTTCATGgtgagtggct ... ctcgcgacagACTCGCGAGTTGCCTACTGGGAGCCTGCAAAGTTCGTCGCCAAGCTGAGAG
EST: GTCTTGCCTCGTGAGTATCCAGATATTCTTGTAACCGGAGGACTTCATG ACTCGCGAGTTGCCTACTGGGAGCCTGCAAAGTTCGTCGCCAAGCTGAGAGEST: gi|169026150|gb|FE435334.1|FE435334
genomic: GTCTTGCCTCGTGAGTATCCAGATATTCTTGTAACCGGAGGACTTCATGgtgagtggct ... ctcgcgacagACTCGCGAGTTGCCTACTGGGAGCCTGCAAAGTTCGTCGCCAAGCTGAGAG
EST: GTCTTGCCTCGTGAGTATCCAGATATTCTTGTAACCGGAGGACTTCATG ACTCGCGAGTTGCCTACTGGGAGCCTGCAAAGTTCGTCGCCAAGCTGAGAGEST: gi|169037305|gb|FE445474.1|FE445474
genomic: GTCTTGCCTCGTGAGTATCCAGATATTCTTGTAACCGGAGGACTTCATGgtgagtggct ... ctcgcgacagACTCGCGAGTTGCCTACTGGGAGCCTGCAAAGTTCGTCGCCAAGCTGAGAG
EST: GTCTTGCCTCGTGAGTATCCAGATATTCTTGTAACCGGAGGACTTCATG ACTCGCGAGTTGCCTACTGGGAGCCTGCAAAGTTTGTCGCCAAGCTGAGAG
genomic: GTCTTGCCTCGTGAGTATCCAGATATTCTTGTAACCGGAGGACTTCATGgtgagtggct ... ctcgcgacagACTCGCGAGTTGCCTACTGGGAGCCTGCAAAGTTCGTCGCCAAGCTGAGAG
gtgagtggcttgatttccgttgcttcaattttgtaaacactctcgcgacagACTCGCGAGTTGCCTACTGGGAGCCTGCAAAGTTCGTCGCCAAGCTGAGAGAAAACAAGACGGACAAGAATCTATTGCTGTTCAAGTGTGATTTTGGAGC
gcttgat putative branch site (score: 6)
cactctc putative PPT
ttcaattttgtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtggcttgatttccgttgcttcaattttgtaaacactctcgcgacagACTCGCGAGTTGCCTACTGGGAGCCTGCAAAGTTCGTCGCCAAGCTGAGAGAAAACAAGACGGACAAGAATCTATTGCTGTTCAAGTGTGATTTTGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG