1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaatccagctattgtattctggttgacgtttactaaaactttgtgtgtttttcagGTTCTTGGCGGCTTCCAGCCTGAGAAATATGTAACACTACGCAAATGGGCAACTGCACAAGATGGCACGCAGGTGCCGATTTCTATGGTTTATCGAAAGG
species | Selaginella moellendorffii |
transcript | EFJ22335 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGACTATGACATGGAAACTGGAAAGTCGATGCTGANAAAGAGGCAGGAG GTTCTTGGCGGCTTCCAGCCTGAGAAATATGTAACACTAEST: gi|169026151|gb|FE435335.1|FE435335
genomic: ATGACTATGACATGGAAACTGGAAAGTCGATGCTGAAAAAGAGGCAGGAGgtaatccagc ... tgtttttcagGTTCTTGGCGGCTTCCAGCCTGAGAAATATGTAACACTA
EST: ATGACTATGACATGGAAACTGGAAAGTCGATGCTGAAAAAGAGGCAGGAG GTTCTTGGCGGCTTCCAGCCTGAGAAATATGTAACACTACGCAAATGGGCA
genomic: ATGACTATGACATGGAAACTGGAAAGTCGATGCTGAAAAAGAGGCAGGAGgtaatccagc ... tgtttttcagGTTCTTGGCGGCTTCCAGCCTGAGAAATATGTAACACTACGCAAATGGGCA
taatccagctattgtattctggttgacgtttactaaaactttgtgtgtttttcagGTTCTTGGCGGCTTCCAGCCTGAGAAATATGTAACACTACGCAAATGGGCAACTGCACAAGATGGCACGCAGGTGCCGATTTCTATGGTTTATCGAAAGG
tactaaa putative branch site (score: 1)
tgtttttc putative PPT
tttactaaaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatccagctattgtattctggttgacgtttactaaaactttgtgtgtttttcagGTTCTTGGCGGCTTCCAGCCTGAGAAATATGTAACACTACGCAAATGGGCAACTGCACAAGATGGCACGCAGGTGCCGATTTCTATGGTTTATCGAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG